Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   CG474_RS16485 Genome accession   NZ_CP024120
Coordinates   3125309..3126055 (-) Length   248 a.a.
NCBI ID   WP_048723863.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3120309..3131055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG474_RS16465 (CG474_016390) dnaG 3121129..3122925 (-) 1797 WP_048723866.1 DNA primase -
  CG474_RS16470 (CG474_016395) - 3122964..3123422 (-) 459 WP_012095485.1 YaiI/YqxD family protein -
  CG474_RS16475 (CG474_016400) - 3123728..3124540 (-) 813 WP_048723865.1 pyruvate, water dikinase regulatory protein -
  CG474_RS16480 (CG474_016405) - 3124570..3125202 (-) 633 WP_087095438.1 helix-turn-helix transcriptional regulator -
  CG474_RS16485 (CG474_016410) recO 3125309..3126055 (-) 747 WP_048723863.1 DNA repair protein RecO Machinery gene
  CG474_RS16490 (CG474_016415) - 3126089..3126232 (-) 144 WP_012095489.1 YqzL family protein -
  CG474_RS16495 (CG474_016420) era 3126343..3127248 (-) 906 WP_012095490.1 GTPase Era -
  CG474_RS24120 - 3127241..3127425 (-) 185 Protein_3163 cytidine deaminase -
  CG474_RS16505 (CG474_016430) - 3127655..3128008 (-) 354 WP_012095491.1 diacylglycerol kinase family protein -
  CG474_RS16510 (CG474_016435) ybeY 3128005..3128475 (-) 471 WP_012095492.1 rRNA maturation RNase YbeY -
  CG474_RS16515 (CG474_016440) - 3128472..3130616 (-) 2145 WP_012095493.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28682.16 Da        Isoelectric Point: 7.4196

>NTDB_id=252261 CG474_RS16485 WP_048723863.1 3125309..3126055(-) (recO) [Bacillus cytotoxicus strain CH_1]
MFQKVEGIVIRTTDYGETNKIVTIFSREFGKISVMARGAKKPKSRLASISQLMTHGHFLIQMGSGLGTLQQGEMISSMKE
IREDIFLTAYASFIVELTDKATEDKKNNPYLFEMLYQTLHYMCDGVDSEVLSLIYQTKMLPVLGMHPYFDTCAICHQETD
FVAFSVREGGFLCFRHAEQDPYRIPVGEAVHKLLRLFYHFDLGRLGNVSVKDETKRQIRTVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=252261 CG474_RS16485 WP_048723863.1 3125309..3126055(-) (recO) [Bacillus cytotoxicus strain CH_1]
ATGTTTCAAAAAGTTGAGGGCATTGTTATCCGAACAACAGATTACGGAGAAACGAACAAGATTGTTACTATATTTTCTCG
TGAATTTGGAAAAATAAGTGTAATGGCAAGAGGAGCGAAAAAACCAAAAAGTAGGTTAGCATCTATTTCGCAACTCATGA
CGCATGGTCATTTCCTAATTCAAATGGGATCTGGTCTCGGAACTTTGCAACAAGGTGAAATGATTTCATCGATGAAAGAA
ATTCGAGAAGATATTTTTTTAACTGCTTATGCATCGTTTATCGTGGAATTGACAGATAAAGCCACGGAAGATAAAAAGAA
CAATCCGTATTTATTTGAAATGTTATATCAGACACTTCACTATATGTGTGATGGTGTTGATTCTGAAGTATTATCTCTTA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCATCCATACTTTGATACATGTGCGATTTGTCACCAAGAAACAGAC
TTTGTCGCCTTCTCTGTAAGAGAAGGCGGTTTTCTGTGCTTTCGTCACGCAGAACAAGATCCGTATCGCATTCCAGTTGG
TGAGGCGGTTCATAAGTTATTACGTCTCTTTTATCACTTTGACTTAGGTCGGCTTGGTAATGTATCAGTAAAAGATGAAA
CGAAGCGACAAATTCGTACCGTATTGAATACATATTATGATGAATATTGTGGCATATATTTGAAATCAAGACGTTTTCTT
GAACAACTTGATAAATTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

56.68

99.597

0.565

Multiple sequence alignment