Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | CG474_RS06125 | Genome accession | NZ_CP024120 |
| Coordinates | 1172802..1173125 (-) | Length | 107 a.a. |
| NCBI ID | WP_011984082.1 | Uniprot ID | A7GMH1 |
| Organism | Bacillus cytotoxicus strain CH_1 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1167802..1178125
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CG474_RS06095 (CG474_006080) | - | 1168143..1168350 (+) | 208 | Protein_1092 | hypothetical protein | - |
| CG474_RS06100 (CG474_006085) | - | 1168508..1169779 (+) | 1272 | WP_011984077.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| CG474_RS06105 (CG474_006090) | sipW | 1169911..1170486 (+) | 576 | WP_011984078.1 | signal peptidase I SipW | - |
| CG474_RS06110 (CG474_006095) | - | 1170532..1171122 (+) | 591 | WP_011984079.1 | TasA family protein | - |
| CG474_RS06115 (CG474_006100) | - | 1171213..1171899 (+) | 687 | WP_011984080.1 | DUF4047 domain-containing protein | - |
| CG474_RS06120 (CG474_006105) | calY | 1172130..1172723 (+) | 594 | WP_011984081.1 | biofilm matrix protein CalY | - |
| CG474_RS06125 (CG474_006110) | sinR | 1172802..1173125 (-) | 324 | WP_011984082.1 | helix-turn-helix domain-containing protein | Regulator |
| CG474_RS06130 (CG474_006115) | - | 1173203..1173334 (-) | 132 | WP_011984083.1 | anti-repressor SinI family protein | - |
| CG474_RS06135 (CG474_006120) | - | 1173696..1176083 (+) | 2388 | WP_011984084.1 | immune inhibitor A domain-containing protein | - |
| CG474_RS06140 (CG474_006125) | - | 1176290..1177654 (+) | 1365 | WP_094398345.1 | aldehyde dehydrogenase | - |
Sequence
Protein
Download Length: 107 a.a. Molecular weight: 12380.21 Da Isoelectric Point: 8.6049
>NTDB_id=252247 CG474_RS06125 WP_011984082.1 1172802..1173125(-) (sinR) [Bacillus cytotoxicus strain CH_1]
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDTLLHDTTPLENQLDSEWTHLV
KEAMNSGVSKEQFREFIEFSKWKQNQK
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDTLLHDTTPLENQLDSEWTHLV
KEAMNSGVSKEQFREFIEFSKWKQNQK
Nucleotide
Download Length: 324 bp
>NTDB_id=252247 CG474_RS06125 WP_011984082.1 1172802..1173125(-) (sinR) [Bacillus cytotoxicus strain CH_1]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAGGCCGGTGTTGC
AAAGTCCTACATTAGCTCCATTGAACGTAATTTACAACAAAATCCGTCCATTCAATTTTTAGAAAAAATCGCAGCCGTTC
TGCAAATACCAATTGACACACTTCTTCATGACACAACACCGTTAGAAAATCAATTAGACTCTGAATGGACACACCTTGTT
AAAGAAGCAATGAACTCTGGTGTCTCAAAAGAACAATTCCGTGAATTCATTGAGTTTAGTAAATGGAAACAAAATCAAAA
ATAA
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAGGCCGGTGTTGC
AAAGTCCTACATTAGCTCCATTGAACGTAATTTACAACAAAATCCGTCCATTCAATTTTTAGAAAAAATCGCAGCCGTTC
TGCAAATACCAATTGACACACTTCTTCATGACACAACACCGTTAGAAAATCAATTAGACTCTGAATGGACACACCTTGTT
AAAGAAGCAATGAACTCTGGTGTCTCAAAAGAACAATTCCGTGAATTCATTGAGTTTAGTAAATGGAAACAAAATCAAAA
ATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
64.22 |
100 |
0.654 |