Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   CG474_RS02255 Genome accession   NZ_CP024120
Coordinates   414287..415240 (+) Length   317 a.a.
NCBI ID   WP_048724317.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 409287..420240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG474_RS02250 (CG474_002245) - 411483..413672 (-) 2190 WP_011983474.1 DNA topoisomerase III -
  CG474_RS02255 (CG474_002250) ceuB 414287..415240 (+) 954 WP_048724317.1 ABC transporter permease Machinery gene
  CG474_RS02260 (CG474_002255) - 415230..416201 (+) 972 WP_011983476.1 iron chelate uptake ABC transporter family permease subunit -
  CG474_RS02265 (CG474_002260) - 416195..416953 (+) 759 WP_011983477.1 ABC transporter ATP-binding protein -
  CG474_RS02270 (CG474_002265) - 417028..417975 (+) 948 WP_011983478.1 siderophore ABC transporter substrate-binding protein -
  CG474_RS02275 (CG474_002270) thiM 418331..419140 (+) 810 WP_011983479.1 hydroxyethylthiazole kinase -
  CG474_RS02280 (CG474_002275) thiE 419154..419807 (+) 654 WP_048724261.1 thiamine phosphate synthase -
  CG474_RS22485 - 419853..419996 (+) 144 WP_157671232.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35198.46 Da        Isoelectric Point: 10.1714

>NTDB_id=252236 CG474_RS02255 WP_048724317.1 414287..415240(+) (ceuB) [Bacillus cytotoxicus strain CH_1]
MKKRYLFIMLIVLSVASIFIGVKDVSLTDVLHWNQEKMQIVFISRLPRLISIIVAGVSLSISGLIMQQLSRNKFVSPTTA
GTMDSAKLGVLVSLMLFTTASPLEKMFIAFIFALAGTFLFMQILKRIKFKDAIFIPLVGIMFGNIISSITTFFAYKYDLI
QNINSWLQGDFSMIMKGRYEILYFSIPLVIIAFLYANRFTVAGMGEDFAANLGMNYNRVLNIGLIIVSLISALVVLTVGM
IPFLGLIIPNIVSIYRGDHLKNSLPHTALLGAVFVLACDILGRVVIYPYEISIGLTVGVIGSGIFLYLLMRRNAYAT

Nucleotide


Download         Length: 954 bp        

>NTDB_id=252236 CG474_RS02255 WP_048724317.1 414287..415240(+) (ceuB) [Bacillus cytotoxicus strain CH_1]
ATGAAAAAAAGATATTTATTTATCATGCTTATTGTTTTATCGGTTGCATCTATTTTTATTGGTGTAAAAGATGTGAGTCT
AACAGATGTTTTGCATTGGAATCAAGAGAAAATGCAAATTGTATTTATCAGTAGATTACCACGTCTCATTAGTATTATTG
TTGCTGGTGTCAGTTTAAGTATAAGTGGTTTAATTATGCAGCAACTGAGCAGAAATAAGTTTGTATCTCCAACAACTGCG
GGAACGATGGATAGTGCAAAGTTGGGCGTTTTAGTCTCCTTAATGTTATTTACGACAGCAAGCCCGCTTGAAAAAATGTT
TATCGCATTTATTTTTGCGCTAGCTGGTACATTTTTGTTTATGCAAATTTTAAAGCGAATTAAATTTAAAGATGCCATTT
TTATTCCGCTTGTTGGAATTATGTTTGGAAACATTATTAGTTCCATTACAACATTTTTTGCTTATAAATATGATTTAATT
CAAAATATTAATTCGTGGCTACAAGGTGACTTTTCAATGATTATGAAGGGGAGATATGAGATTTTATATTTCAGTATTCC
GCTTGTAATCATCGCCTTTTTATATGCAAATCGTTTTACCGTTGCTGGAATGGGGGAAGATTTTGCAGCGAATTTAGGAA
TGAATTACAATCGAGTGCTAAATATTGGGCTTATTATCGTTTCTCTCATCTCTGCATTAGTTGTTTTAACTGTTGGGATG
ATTCCATTTTTAGGACTTATTATTCCAAATATCGTTTCAATTTATCGCGGAGATCATTTGAAAAATAGTTTACCTCATAC
TGCCTTGTTAGGAGCTGTTTTTGTACTAGCTTGCGATATACTTGGTAGGGTCGTAATTTATCCGTATGAAATTTCGATTG
GTCTTACAGTAGGAGTGATCGGAAGCGGAATCTTCCTTTATTTATTAATGAGGAGAAACGCATATGCAACATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

98.738

0.536

Multiple sequence alignment