Detailed information NTG0252212

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DF192_RS14090
• Genome accession: NZ_CP029238
• Coordinates: 2866559..2867551 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain CJ236
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2861559..2872551

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DF192_RS14070 (DF192_14945)	otnK	2862335..2863501 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
DF192_RS14075 (DF192_14950)	ygbL	2863593..2864231 (+)	639	WP_001278994.1	aldolase	-
DF192_RS14080 (DF192_14955)	ygbM	2864236..2865012 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
DF192_RS14085 (DF192_14960)	ygbN	2865101..2866465 (+)	1365	WP_000104441.1	GntP family transporter	-
DF192_RS14090 (DF192_14965)	rpoS	2866559..2867551 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
DF192_RS14095 (DF192_14970)	nlpD	2867614..2868708 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
DF192_RS14100 (DF192_14975)	pcm	2868893..2869519 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
DF192_RS14105 (DF192_14980)	surE	2869513..2870274 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
DF192_RS14110 (DF192_14985)	truD	2870255..2871304 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
DF192_RS14115 (DF192_14990)	ispF	2871301..2871780 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DF192_RS14120 (DF192_14995)	ispD	2871780..2872490 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=252212 DF192_RS14090 WP_000081588.1 2866559..2867551(-) (rpoS) [Escherichia coli strain CJ236]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=252212 DF192_RS14090 WP_000081588.1 2866559..2867551(-) (rpoS) [Escherichia coli strain CJ236]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715