Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CG476_RS10450 Genome accession   NZ_CP024116
Coordinates   2040388..2040666 (+) Length   92 a.a.
NCBI ID   WP_012094321.1    Uniprot ID   A7GPS3
Organism   Bacillus cytotoxicus strain CH_2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2035388..2045666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG476_RS10425 (CG476_010385) - 2035947..2036714 (+) 768 WP_087094939.1 4'-phosphopantetheinyl transferase family protein -
  CG476_RS10430 (CG476_010390) - 2036942..2037567 (+) 626 Protein_1953 DDE-type integrase/transposase/recombinase -
  CG476_RS10435 (CG476_010395) - 2037806..2038426 (+) 621 WP_012094317.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  CG476_RS10440 (CG476_010400) - 2038404..2039111 (+) 708 WP_179196701.1 SGNH/GDSL hydrolase family protein -
  CG476_RS10445 (CG476_010405) - 2039133..2039963 (+) 831 WP_087094941.1 SDR family NAD(P)-dependent oxidoreductase -
  CG476_RS10450 (CG476_010410) abrB 2040388..2040666 (+) 279 WP_012094321.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CG476_RS10455 (CG476_010415) - 2040885..2041679 (+) 795 WP_012094322.1 LysM peptidoglycan-binding domain-containing protein -
  CG476_RS10460 (CG476_010420) - 2041875..2042096 (+) 222 WP_041809735.1 hypothetical protein -
  CG476_RS10465 (CG476_010425) - 2042229..2043920 (-) 1692 WP_087094942.1 M3 family oligoendopeptidase -
  CG476_RS10470 (CG476_010430) - 2044572..2045171 (+) 600 WP_087094943.1 type 1 glutamine amidotransferase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10433.25 Da        Isoelectric Point: 6.3246

>NTDB_id=252204 CG476_RS10450 WP_012094321.1 2040388..2040666(+) (abrB) [Bacillus cytotoxicus strain CH_2]
MKSTGIIRKVDELGRIVIPKELRDMLDIGIKSPLEIFVENERIVLKKYVPYNTCQITGEVSNDNISLANGKIILSPEGAK
YLIQELENYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=252204 CG476_RS10450 WP_012094321.1 2040388..2040666(+) (abrB) [Bacillus cytotoxicus strain CH_2]
ATGAAATCAACTGGAATTATCCGAAAAGTGGATGAACTTGGAAGAATTGTTATCCCAAAAGAATTAAGAGACATGTTAGA
TATTGGCATTAAATCACCTTTGGAAATATTTGTAGAAAATGAAAGAATCGTTTTAAAGAAATATGTACCTTACAACACTT
GTCAAATAACAGGAGAAGTATCGAATGATAATATTTCACTTGCAAATGGTAAAATTATTTTAAGTCCTGAAGGGGCAAAA
TATTTAATTCAAGAGTTAGAGAACTATTTAGTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GPS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

63.333

97.826

0.62

Multiple sequence alignment