Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   DEH83_RS06370 Genome accession   NZ_CP029207
Coordinates   1261446..1261904 (+) Length   152 a.a.
NCBI ID   WP_006270314.1    Uniprot ID   -
Organism   Streptococcus constellatus strain TCV107     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256446..1266904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEH83_RS06355 (DEH83_06365) scrK 1258446..1259345 (+) 900 WP_255776422.1 fructokinase ScrK -
  DEH83_RS06360 (DEH83_06370) - 1259411..1259821 (+) 411 WP_255776423.1 peptide deformylase -
  DEH83_RS06365 (DEH83_06375) - 1260088..1261275 (+) 1188 WP_255776424.1 NADH-dependent flavin oxidoreductase -
  DEH83_RS06370 (DEH83_06380) rcrR 1261446..1261904 (+) 459 WP_006270314.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  DEH83_RS06375 (DEH83_06385) rcrP 1261897..1263663 (+) 1767 WP_255776425.1 ABC transporter ATP-binding protein Regulator
  DEH83_RS06380 (DEH83_06390) rcrQ 1263653..1265413 (+) 1761 WP_255776426.1 ABC transporter ATP-binding protein Regulator
  DEH83_RS06385 (DEH83_06395) - 1265623..1265937 (+) 315 WP_003031794.1 PTS cellobiose transporter subunit IIB -
  DEH83_RS06390 (DEH83_06400) - 1265948..1266268 (+) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17679.66 Da        Isoelectric Point: 9.5065

>NTDB_id=252138 DEH83_RS06370 WP_006270314.1 1261446..1261904(+) (rcrR) [Streptococcus constellatus strain TCV107]
MEKPLLEFKRFGRKTHLMIQKIAKERGIEFMAGPQGQVLHFVNHREDCGKMTFIKDIEQELGITKSVASNLMKRMVKNGL
IYLEVSEADKRAKIIRLTSESKERMNKIRDFFDEMDRCLLTGISEEDLVTFFQIMGRFYQNIEKIGKGEANG

Nucleotide


Download         Length: 459 bp        

>NTDB_id=252138 DEH83_RS06370 WP_006270314.1 1261446..1261904(+) (rcrR) [Streptococcus constellatus strain TCV107]
ATGGAAAAACCATTATTGGAATTCAAGCGATTTGGACGGAAGACACATCTGATGATTCAAAAAATTGCCAAAGAGCGAGG
GATTGAATTTATGGCGGGTCCACAAGGGCAAGTATTGCATTTTGTGAATCATCGAGAAGATTGTGGCAAGATGACCTTTA
TTAAAGATATTGAGCAGGAGTTGGGAATTACCAAGTCAGTTGCTAGTAATTTAATGAAGCGAATGGTTAAAAATGGCTTG
ATTTATCTGGAAGTGAGTGAAGCAGATAAACGCGCTAAGATTATTCGTTTGACATCGGAATCAAAAGAGCGCATGAATAA
AATTCGGGATTTCTTTGATGAGATGGATCGCTGCTTATTGACTGGCATTTCAGAAGAAGATTTGGTGACTTTTTTTCAAA
TAATGGGGCGATTTTATCAGAATATTGAAAAAATAGGAAAAGGAGAAGCGAATGGTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.361

94.737

0.401

Multiple sequence alignment