Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | CG478_RS00525 | Genome accession | NZ_CP024111 |
| Coordinates | 95944..98379 (+) | Length | 811 a.a. |
| NCBI ID | WP_087094328.1 | Uniprot ID | - |
| Organism | Bacillus cytotoxicus strain CH_4 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 90944..103379
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CG478_RS00510 (CG478_000510) | - | 93688..94149 (+) | 462 | WP_011983217.1 | CtsR family transcriptional regulator | - |
| CG478_RS00515 (CG478_000515) | - | 94305..94853 (+) | 549 | WP_011983218.1 | UvrB/UvrC motif-containing protein | - |
| CG478_RS00520 (CG478_000520) | - | 94858..95928 (+) | 1071 | WP_011983219.1 | protein arginine kinase | - |
| CG478_RS00525 (CG478_000525) | clpC | 95944..98379 (+) | 2436 | WP_087094328.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| CG478_RS00530 (CG478_000530) | radA | 98467..99843 (+) | 1377 | WP_011983221.1 | DNA repair protein RadA | Machinery gene |
| CG478_RS00535 (CG478_000535) | disA | 99847..100920 (+) | 1074 | WP_011983222.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| CG478_RS00540 (CG478_000540) | - | 101082..102194 (+) | 1113 | WP_011983223.1 | PIN/TRAM domain-containing protein | - |
| CG478_RS00545 (CG478_000545) | ispD | 102211..102891 (+) | 681 | WP_011983224.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90860.93 Da Isoelectric Point: 6.3442
>NTDB_id=252091 CG478_RS00525 WP_087094328.1 95944..98379(+) (clpC) [Bacillus cytotoxicus strain CH_4]
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKIQKEVEALIGRGTEVSQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEAASGHQGASSTNAN
TPTLDSLARDLTVIARESRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIEAAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDESRDYADMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVKRLEEQEIYLELTDAAIEAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGVIEKGQKVIFDKERE
SFVIRSAEKVK
MMFGRFTERAQKVLALSQEEAIRIGHNNIGTEHILLGLVREGEGIAAKALIALGLSPEKIQKEVEALIGRGTEVSQTVHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNEAASGHQGASSTNAN
TPTLDSLARDLTVIARESRLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIVNNEVPETLRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSLEESIQILKGLRDRYEAHHRVSITDDAIEAAVKLSDRYITDRFLPDKAIDLIDEAA
SKVRLRSYTTPPNLKELEVKLEEIRKEKDAAVQSQEFEKAASLRDMEQRLREKLEDTKRQWKEQQGKENSEVTVEDIANV
VSTWTRIPVSKLAQTETDKLLNLESILHDRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESMFGDEDAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTIVIMTSNVGAEALKRNKHLGFNVQDESRDYADMKGKVMDELKKAFRPEFLNRIDEIIVFHMLEKKHI
QEIVTLMVNQLVKRLEEQEIYLELTDAAIEAIADKGFDREYGARPLRRAIQKHVEDRLSEELLKGVIEKGQKVIFDKERE
SFVIRSAEKVK
Nucleotide
Download Length: 2436 bp
>NTDB_id=252091 CG478_RS00525 WP_087094328.1 95944..98379(+) (clpC) [Bacillus cytotoxicus strain CH_4]
ATGATGTTTGGAAGATTTACAGAACGAGCGCAGAAAGTATTAGCTTTATCTCAAGAGGAAGCAATCCGTATTGGTCATAA
TAATATTGGAACAGAGCATATTTTACTTGGGCTAGTACGTGAAGGTGAAGGTATTGCAGCGAAAGCATTAATTGCTCTTG
GCTTAAGCCCAGAGAAGATACAAAAAGAAGTAGAGGCATTAATTGGTCGTGGTACAGAAGTATCTCAGACTGTTCATTAT
ACTCCGCGTGCGAAAAAGGTCATTGAATTATCTATGGATGAAGCACGTAAATTAGGTCATTCTTATGTTGGAACGGAGCA
TATCTTACTAGGATTAATTCGTGAAGGAGAAGGCGTTGCAGCGCGTGTTTTAAATAACTTAGGTGTAAGTTTAAATAAGG
CGAGACAACAAGTGTTACAACTTCTTGGAAGCAATGAAGCAGCTTCAGGTCATCAAGGTGCTTCATCGACAAATGCCAAT
ACACCAACTTTGGATAGCTTAGCACGTGATTTAACAGTAATTGCACGTGAAAGTAGATTAGATCCTGTTATTGGGCGCAG
TAAGGAAATTCAACGGGTTATTGAGGTGTTAAGCCGTAGAACAAAAAATAACCCGGTGCTAATTGGGGAGCCAGGTGTAG
GTAAGACTGCAATCGCAGAAGGCTTAGCGCAACAAATTGTAAATAACGAAGTTCCGGAAACATTACGAGATAAACGTGTT
ATGACATTAGATATGGGAACAGTTGTAGCTGGTACAAAATATCGTGGTGAGTTTGAGGATCGTTTAAAAAAAGTAATGGA
TGAGATTCGTCAGGCAGGTAACATTATTTTATTTATTGACGAACTTCATACATTAATTGGTGCAGGCGGTGCAGAAGGGG
CAATTGATGCATCGAATATTTTAAAACCTTCGCTAGCGCGTGGCGAACTACAATGTATTGGTGCGACAACTTTAGATGAG
TATCGAAAATATATTGAAAAAGACGCAGCGTTAGAGCGGCGCTTCCAACCAATTCAAGTGGATGAACCAAGCTTGGAAGA
ATCTATTCAAATTTTGAAAGGGTTGCGTGATCGATATGAAGCGCATCACCGTGTATCTATTACAGATGATGCAATCGAGG
CAGCGGTAAAGCTTTCAGATCGCTATATTACAGATCGCTTCTTACCGGATAAAGCAATCGATTTAATTGATGAGGCGGCT
TCTAAAGTACGTTTACGTTCTTATACAACGCCACCAAACTTAAAAGAATTAGAAGTGAAACTTGAGGAAATTCGTAAAGA
AAAAGATGCAGCTGTGCAGAGTCAAGAATTCGAAAAAGCTGCTTCATTACGAGATATGGAGCAACGTTTACGTGAAAAAT
TAGAGGATACAAAACGTCAGTGGAAAGAACAGCAAGGAAAAGAAAACTCTGAAGTGACAGTAGAGGATATTGCAAACGTT
GTTTCTACATGGACGCGTATTCCAGTTTCTAAGCTTGCACAAACAGAAACGGATAAATTGTTAAACTTAGAATCCATTTT
ACATGATCGTGTAATCGGTCAAGATGAAGCTGTTGTAGCTGTAGCGAAGGCGGTACGTCGTGCAAGAGCTGGCTTAAAAG
ATCCAAAACGTCCAATTGGTTCCTTTATTTTCTTAGGACCAACTGGTGTTGGGAAAACAGAATTAGCACGAGCATTAGCG
GAATCTATGTTCGGTGATGAGGATGCTATGATCCGCATCGACATGTCGGAATATATGGAGAAACATTCTACATCTCGTTT
AGTTGGTTCTCCTCCAGGATATGTAGGATATGAAGAGGGCGGTCAATTAACAGAGAAGGTTCGTCGTAAACCGTATTCTG
TTGTTCTATTAGATGAAGTAGAAAAAGCACATCCAGATGTATTTAATATTTTATTACAAGTATTAGAAGACGGCCGTTTG
ACAGACTCTAAAGGTCGCACAGTTGATTTCCGTAATACAATTGTGATTATGACTTCTAACGTTGGTGCTGAGGCATTAAA
ACGCAATAAACATCTTGGATTTAACGTGCAAGATGAGAGCCGTGACTATGCAGATATGAAAGGAAAAGTAATGGACGAAT
TGAAAAAAGCATTCCGTCCAGAATTCTTGAACCGTATCGATGAAATCATTGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAAATTGTGACACTAATGGTAAATCAACTAGTAAAACGATTAGAAGAACAAGAGATTTATTTAGAGTTAACGGACGC
TGCAATTGAAGCGATTGCTGATAAAGGGTTCGATCGCGAGTATGGTGCTCGTCCACTTCGCAGAGCAATTCAGAAACATG
TGGAAGATCGATTATCAGAAGAACTTCTAAAAGGAGTCATTGAGAAAGGACAAAAAGTTATCTTTGATAAAGAGAGAGAA
TCATTTGTCATTCGCAGTGCAGAAAAGGTAAAATAA
ATGATGTTTGGAAGATTTACAGAACGAGCGCAGAAAGTATTAGCTTTATCTCAAGAGGAAGCAATCCGTATTGGTCATAA
TAATATTGGAACAGAGCATATTTTACTTGGGCTAGTACGTGAAGGTGAAGGTATTGCAGCGAAAGCATTAATTGCTCTTG
GCTTAAGCCCAGAGAAGATACAAAAAGAAGTAGAGGCATTAATTGGTCGTGGTACAGAAGTATCTCAGACTGTTCATTAT
ACTCCGCGTGCGAAAAAGGTCATTGAATTATCTATGGATGAAGCACGTAAATTAGGTCATTCTTATGTTGGAACGGAGCA
TATCTTACTAGGATTAATTCGTGAAGGAGAAGGCGTTGCAGCGCGTGTTTTAAATAACTTAGGTGTAAGTTTAAATAAGG
CGAGACAACAAGTGTTACAACTTCTTGGAAGCAATGAAGCAGCTTCAGGTCATCAAGGTGCTTCATCGACAAATGCCAAT
ACACCAACTTTGGATAGCTTAGCACGTGATTTAACAGTAATTGCACGTGAAAGTAGATTAGATCCTGTTATTGGGCGCAG
TAAGGAAATTCAACGGGTTATTGAGGTGTTAAGCCGTAGAACAAAAAATAACCCGGTGCTAATTGGGGAGCCAGGTGTAG
GTAAGACTGCAATCGCAGAAGGCTTAGCGCAACAAATTGTAAATAACGAAGTTCCGGAAACATTACGAGATAAACGTGTT
ATGACATTAGATATGGGAACAGTTGTAGCTGGTACAAAATATCGTGGTGAGTTTGAGGATCGTTTAAAAAAAGTAATGGA
TGAGATTCGTCAGGCAGGTAACATTATTTTATTTATTGACGAACTTCATACATTAATTGGTGCAGGCGGTGCAGAAGGGG
CAATTGATGCATCGAATATTTTAAAACCTTCGCTAGCGCGTGGCGAACTACAATGTATTGGTGCGACAACTTTAGATGAG
TATCGAAAATATATTGAAAAAGACGCAGCGTTAGAGCGGCGCTTCCAACCAATTCAAGTGGATGAACCAAGCTTGGAAGA
ATCTATTCAAATTTTGAAAGGGTTGCGTGATCGATATGAAGCGCATCACCGTGTATCTATTACAGATGATGCAATCGAGG
CAGCGGTAAAGCTTTCAGATCGCTATATTACAGATCGCTTCTTACCGGATAAAGCAATCGATTTAATTGATGAGGCGGCT
TCTAAAGTACGTTTACGTTCTTATACAACGCCACCAAACTTAAAAGAATTAGAAGTGAAACTTGAGGAAATTCGTAAAGA
AAAAGATGCAGCTGTGCAGAGTCAAGAATTCGAAAAAGCTGCTTCATTACGAGATATGGAGCAACGTTTACGTGAAAAAT
TAGAGGATACAAAACGTCAGTGGAAAGAACAGCAAGGAAAAGAAAACTCTGAAGTGACAGTAGAGGATATTGCAAACGTT
GTTTCTACATGGACGCGTATTCCAGTTTCTAAGCTTGCACAAACAGAAACGGATAAATTGTTAAACTTAGAATCCATTTT
ACATGATCGTGTAATCGGTCAAGATGAAGCTGTTGTAGCTGTAGCGAAGGCGGTACGTCGTGCAAGAGCTGGCTTAAAAG
ATCCAAAACGTCCAATTGGTTCCTTTATTTTCTTAGGACCAACTGGTGTTGGGAAAACAGAATTAGCACGAGCATTAGCG
GAATCTATGTTCGGTGATGAGGATGCTATGATCCGCATCGACATGTCGGAATATATGGAGAAACATTCTACATCTCGTTT
AGTTGGTTCTCCTCCAGGATATGTAGGATATGAAGAGGGCGGTCAATTAACAGAGAAGGTTCGTCGTAAACCGTATTCTG
TTGTTCTATTAGATGAAGTAGAAAAAGCACATCCAGATGTATTTAATATTTTATTACAAGTATTAGAAGACGGCCGTTTG
ACAGACTCTAAAGGTCGCACAGTTGATTTCCGTAATACAATTGTGATTATGACTTCTAACGTTGGTGCTGAGGCATTAAA
ACGCAATAAACATCTTGGATTTAACGTGCAAGATGAGAGCCGTGACTATGCAGATATGAAAGGAAAAGTAATGGACGAAT
TGAAAAAAGCATTCCGTCCAGAATTCTTGAACCGTATCGATGAAATCATTGTGTTCCATATGCTTGAGAAAAAACATATT
CAAGAAATTGTGACACTAATGGTAAATCAACTAGTAAAACGATTAGAAGAACAAGAGATTTATTTAGAGTTAACGGACGC
TGCAATTGAAGCGATTGCTGATAAAGGGTTCGATCGCGAGTATGGTGCTCGTCCACTTCGCAGAGCAATTCAGAAACATG
TGGAAGATCGATTATCAGAAGAACTTCTAAAAGGAGTCATTGAGAAAGGACAAAAAGTTATCTTTGATAAAGAGAGAGAA
TCATTTGTCATTCGCAGTGCAGAAAAGGTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
86.914 |
99.877 |
0.868 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.375 |
98.644 |
0.497 |
| clpC | Streptococcus thermophilus LMD-9 |
46.327 |
100 |
0.482 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.843 |
100 |
0.476 |
| clpC | Streptococcus mutans UA159 |
44.678 |
100 |
0.471 |
| clpC | Streptococcus pneumoniae D39 |
47.382 |
98.89 |
0.469 |
| clpC | Streptococcus pneumoniae Rx1 |
47.382 |
98.89 |
0.469 |
| clpC | Streptococcus pneumoniae TIGR4 |
47.081 |
99.26 |
0.467 |
| clpE | Streptococcus mutans UA159 |
54 |
80.148 |
0.433 |
| clpE | Streptococcus pneumoniae R6 |
53.168 |
79.778 |
0.424 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.168 |
79.778 |
0.424 |
| clpE | Streptococcus pneumoniae Rx1 |
53.168 |
79.778 |
0.424 |
| clpE | Streptococcus pneumoniae D39 |
53.168 |
79.778 |
0.424 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.208 |
78.175 |
0.408 |