Detailed information
Bioinformatically predicted
Overview
| Name | comFA | Type | Machinery gene |
| Locus tag | CG479_RS19865 | Genome accession | NZ_CP024109 |
| Coordinates | 3781342..3782691 (-) | Length | 449 a.a. |
| NCBI ID | WP_048723495.1 | Uniprot ID | - |
| Organism | Bacillus cytotoxicus strain CH_13 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3776342..3787691
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CG479_RS19845 (CG479_019810) | secA | 3776552..3779062 (-) | 2511 | WP_048723492.1 | preprotein translocase subunit SecA | - |
| CG479_RS19850 (CG479_019815) | hpf | 3779425..3779964 (-) | 540 | WP_012096178.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| CG479_RS19855 (CG479_019825) | - | 3780318..3780515 (-) | 198 | WP_012096179.1 | cold shock domain-containing protein | - |
| CG479_RS19860 (CG479_019830) | - | 3780638..3781342 (-) | 705 | WP_048723493.1 | ComF family protein | - |
| CG479_RS19865 (CG479_019835) | comFA | 3781342..3782691 (-) | 1350 | WP_048723495.1 | DEAD/DEAH box helicase | Machinery gene |
| CG479_RS19870 (CG479_019840) | - | 3782817..3784046 (-) | 1230 | WP_087099355.1 | C40 family peptidase | - |
| CG479_RS19875 (CG479_019845) | - | 3784317..3784631 (-) | 315 | WP_012096183.1 | winged helix-turn-helix transcriptional regulator | - |
| CG479_RS19880 (CG479_019850) | - | 3784916..3785758 (-) | 843 | WP_094396576.1 | DegV family protein | - |
| CG479_RS19885 (CG479_019855) | - | 3786149..3786787 (+) | 639 | WP_012096185.1 | YigZ family protein | - |
Sequence
Protein
Download Length: 449 a.a. Molecular weight: 51530.44 Da Isoelectric Point: 9.7376
>NTDB_id=252082 CG479_RS19865 WP_048723495.1 3781342..3782691(-) (comFA) [Bacillus cytotoxicus strain CH_13]
MIQKGRQMLLHELSWSKEQLHDFISRGEIVLEKGIVRKNSNYICQRCGNQEKRLFASFLCKRCNQVCAYCRKCIMMGRVS
ECTMLVRSVCEGKQECFPHALQWKGVLSPGQNRAAKGVVEAIKQKESFFIWAVCGAGKTEMLFSGIDEALKNGKRVCIAT
PRKDVVLELAPRLQEVFPDIPFATLYGGSKEYEKEAMLIVTTTHQLLRYYRAFDVMIIDEIDAFPYVMDHMLHEAVRKAA
KEDASYIYLTATPEEKWKQSVQNGKQKGVIISGRYHRHPLPVPKLKWCGNWRKLLRRKQIPQVLLDWLLIYLQKHYPIFL
FVPHICYVEEVTAVLQRLHHKITGVHAEDPMRKEKVEAFRKGDIPLLITTTILERGVTVANLQVAVLGAEEDIFSESALV
QIAGRVGRSSHNPKGEVIYFHYGKTKAMTAAKKHIQFMNKRAKREGLID
MIQKGRQMLLHELSWSKEQLHDFISRGEIVLEKGIVRKNSNYICQRCGNQEKRLFASFLCKRCNQVCAYCRKCIMMGRVS
ECTMLVRSVCEGKQECFPHALQWKGVLSPGQNRAAKGVVEAIKQKESFFIWAVCGAGKTEMLFSGIDEALKNGKRVCIAT
PRKDVVLELAPRLQEVFPDIPFATLYGGSKEYEKEAMLIVTTTHQLLRYYRAFDVMIIDEIDAFPYVMDHMLHEAVRKAA
KEDASYIYLTATPEEKWKQSVQNGKQKGVIISGRYHRHPLPVPKLKWCGNWRKLLRRKQIPQVLLDWLLIYLQKHYPIFL
FVPHICYVEEVTAVLQRLHHKITGVHAEDPMRKEKVEAFRKGDIPLLITTTILERGVTVANLQVAVLGAEEDIFSESALV
QIAGRVGRSSHNPKGEVIYFHYGKTKAMTAAKKHIQFMNKRAKREGLID
Nucleotide
Download Length: 1350 bp
>NTDB_id=252082 CG479_RS19865 WP_048723495.1 3781342..3782691(-) (comFA) [Bacillus cytotoxicus strain CH_13]
ATGATACAAAAAGGAAGACAAATGTTATTGCATGAACTTTCATGGTCAAAAGAACAGTTGCACGATTTCATAAGTAGAGG
GGAGATTGTATTAGAAAAAGGGATTGTTCGAAAAAATTCCAATTATATATGCCAACGTTGCGGGAATCAAGAGAAACGTC
TATTTGCATCATTTTTATGCAAAAGGTGTAATCAAGTATGTGCGTATTGCCGGAAGTGTATTATGATGGGACGAGTAAGC
GAATGTACGATGCTTGTTCGAAGTGTTTGCGAAGGGAAACAAGAATGTTTTCCTCATGCCTTGCAGTGGAAAGGAGTATT
GTCACCGGGGCAAAATAGAGCTGCAAAGGGGGTAGTAGAAGCGATTAAACAGAAAGAGTCCTTTTTTATTTGGGCGGTAT
GTGGTGCTGGAAAAACGGAGATGTTGTTTTCTGGCATAGATGAAGCGCTTAAAAACGGTAAGCGAGTTTGTATAGCGACG
CCTCGAAAAGATGTTGTATTAGAATTAGCTCCACGACTACAAGAAGTGTTTCCAGATATACCATTTGCGACATTATACGG
AGGCAGTAAAGAATATGAAAAAGAAGCGATGCTTATCGTAACTACAACTCATCAGTTGCTTCGCTATTATAGGGCGTTTG
ATGTCATGATTATAGATGAAATTGATGCTTTTCCGTATGTGATGGATCATATGTTACATGAGGCCGTAAGAAAAGCGGCG
AAGGAGGATGCTTCCTATATTTATTTAACAGCAACTCCAGAAGAGAAATGGAAACAGAGTGTGCAAAATGGTAAACAAAA
AGGTGTTATTATATCAGGACGTTATCATCGCCATCCATTACCGGTTCCTAAATTAAAATGGTGTGGAAATTGGAGAAAAC
TACTTCGACGTAAACAAATTCCTCAAGTTCTATTGGACTGGCTTCTTATATATCTACAAAAACATTATCCTATCTTTTTA
TTTGTTCCTCATATTTGTTATGTAGAGGAAGTAACGGCTGTGTTACAAAGATTACATCATAAAATTACTGGTGTTCATGC
AGAAGATCCAATGAGAAAAGAGAAAGTAGAGGCATTTCGTAAAGGGGATATACCATTACTCATAACTACAACTATATTGG
AGAGAGGGGTAACGGTCGCGAATTTACAAGTAGCTGTGCTAGGAGCAGAAGAGGATATTTTTTCTGAAAGTGCACTGGTT
CAGATAGCGGGCCGCGTTGGTAGAAGTTCTCACAATCCAAAGGGGGAAGTCATTTATTTTCATTATGGAAAAACGAAAGC
AATGACTGCTGCGAAAAAGCATATTCAATTTATGAATAAAAGGGCTAAACGAGAAGGGTTGATAGATTGA
ATGATACAAAAAGGAAGACAAATGTTATTGCATGAACTTTCATGGTCAAAAGAACAGTTGCACGATTTCATAAGTAGAGG
GGAGATTGTATTAGAAAAAGGGATTGTTCGAAAAAATTCCAATTATATATGCCAACGTTGCGGGAATCAAGAGAAACGTC
TATTTGCATCATTTTTATGCAAAAGGTGTAATCAAGTATGTGCGTATTGCCGGAAGTGTATTATGATGGGACGAGTAAGC
GAATGTACGATGCTTGTTCGAAGTGTTTGCGAAGGGAAACAAGAATGTTTTCCTCATGCCTTGCAGTGGAAAGGAGTATT
GTCACCGGGGCAAAATAGAGCTGCAAAGGGGGTAGTAGAAGCGATTAAACAGAAAGAGTCCTTTTTTATTTGGGCGGTAT
GTGGTGCTGGAAAAACGGAGATGTTGTTTTCTGGCATAGATGAAGCGCTTAAAAACGGTAAGCGAGTTTGTATAGCGACG
CCTCGAAAAGATGTTGTATTAGAATTAGCTCCACGACTACAAGAAGTGTTTCCAGATATACCATTTGCGACATTATACGG
AGGCAGTAAAGAATATGAAAAAGAAGCGATGCTTATCGTAACTACAACTCATCAGTTGCTTCGCTATTATAGGGCGTTTG
ATGTCATGATTATAGATGAAATTGATGCTTTTCCGTATGTGATGGATCATATGTTACATGAGGCCGTAAGAAAAGCGGCG
AAGGAGGATGCTTCCTATATTTATTTAACAGCAACTCCAGAAGAGAAATGGAAACAGAGTGTGCAAAATGGTAAACAAAA
AGGTGTTATTATATCAGGACGTTATCATCGCCATCCATTACCGGTTCCTAAATTAAAATGGTGTGGAAATTGGAGAAAAC
TACTTCGACGTAAACAAATTCCTCAAGTTCTATTGGACTGGCTTCTTATATATCTACAAAAACATTATCCTATCTTTTTA
TTTGTTCCTCATATTTGTTATGTAGAGGAAGTAACGGCTGTGTTACAAAGATTACATCATAAAATTACTGGTGTTCATGC
AGAAGATCCAATGAGAAAAGAGAAAGTAGAGGCATTTCGTAAAGGGGATATACCATTACTCATAACTACAACTATATTGG
AGAGAGGGGTAACGGTCGCGAATTTACAAGTAGCTGTGCTAGGAGCAGAAGAGGATATTTTTTCTGAAAGTGCACTGGTT
CAGATAGCGGGCCGCGTTGGTAGAAGTTCTCACAATCCAAAGGGGGAAGTCATTTATTTTCATTATGGAAAAACGAAAGC
AATGACTGCTGCGAAAAAGCATATTCAATTTATGAATAAAAGGGCTAAACGAGAAGGGTTGATAGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFA | Bacillus subtilis subsp. subtilis str. 168 |
50.113 |
98.218 |
0.492 |
| comFA | Latilactobacillus sakei subsp. sakei 23K |
38.626 |
93.987 |
0.363 |