Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   CG479_RS14400 Genome accession   NZ_CP024109
Coordinates   2775022..2775480 (+) Length   152 a.a.
NCBI ID   WP_012095154.1    Uniprot ID   A7GS23
Organism   Bacillus cytotoxicus strain CH_13     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2770022..2780480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG479_RS14385 (CG479_014365) - 2770672..2770890 (+) 219 WP_012095151.1 hypothetical protein -
  CG479_RS14390 (CG479_014370) - 2771085..2773193 (-) 2109 WP_012095152.1 RNA degradosome polyphosphate kinase -
  CG479_RS14395 (CG479_014375) - 2773302..2774840 (-) 1539 WP_012095153.1 Ppx/GppA family phosphatase -
  CG479_RS14400 (CG479_014380) kre 2775022..2775480 (+) 459 WP_012095154.1 YkyB family protein Regulator
  CG479_RS14405 (CG479_014385) - 2775503..2776159 (-) 657 WP_012095155.1 YkyA family protein -
  CG479_RS14410 (CG479_014390) - 2776176..2777000 (-) 825 WP_012095156.1 peptidoglycan-N-acetylglucosamine deacetylase -
  CG479_RS14415 (CG479_014395) - 2777397..2778053 (-) 657 WP_012095157.1 GGDEF domain-containing protein -
  CG479_RS14420 (CG479_014400) - 2778216..2778449 (+) 234 WP_012095158.1 phage holin -
  CG479_RS14425 (CG479_014405) - 2778477..2778992 (-) 516 WP_012095159.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17668.35 Da        Isoelectric Point: 10.7589

>NTDB_id=252067 CG479_RS14400 WP_012095154.1 2775022..2775480(+) (kre) [Bacillus cytotoxicus strain CH_13]
MKQSHPQSHSPKQYSVNQLAQSIFVVNRHAKAATNPKYLYWLKKVALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKDDFRTLPHLGALESSYRNPKTTLSLTTAKKTLQNFIGPEALTQEKKLSEAIPWYRRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=252067 CG479_RS14400 WP_012095154.1 2775022..2775480(+) (kre) [Bacillus cytotoxicus strain CH_13]
ATGAAACAATCCCACCCTCAATCTCATTCACCAAAACAATATTCTGTTAATCAATTAGCTCAATCTATTTTTGTTGTAAA
TCGTCATGCAAAGGCAGCTACAAATCCTAAATATTTATATTGGTTAAAAAAAGTTGCTTTAGAGCGACTAATTGCTGAAA
AAAAGGCGATTAAAGAAGGTCTACATTTTTCTCGAAATCCACGCTTCAGTCAACAACAGTCTGACGTCTTGATCCGTCTA
GGTGATTACTTTTTCCATATTCCTCCCACAAAAGATGATTTTCGTACTCTCCCACATCTTGGTGCTCTTGAATCTTCCTA
TCGTAATCCCAAAACTACCCTTTCTTTAACAACAGCAAAGAAGACTCTTCAAAATTTCATCGGTCCTGAAGCCTTAACAC
AAGAAAAAAAATTAAGCGAAGCTATTCCGTGGTATCGACGTACGTACACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GS23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487

Multiple sequence alignment