Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   CG479_RS10025 Genome accession   NZ_CP024109
Coordinates   1947575..1947853 (+) Length   92 a.a.
NCBI ID   WP_012094321.1    Uniprot ID   A7GPS3
Organism   Bacillus cytotoxicus strain CH_13     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1942575..1952853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG479_RS10000 (CG479_009935) - 1943233..1944000 (+) 768 WP_012094315.1 4'-phosphopantetheinyl transferase family protein -
  CG479_RS10005 (CG479_009940) - 1944228..1944853 (+) 626 Protein_1875 DDE-type integrase/transposase/recombinase -
  CG479_RS10010 (CG479_009945) - 1945092..1945712 (+) 621 WP_012094317.1 TetR family transcriptional regulator C-terminal domain-containing protein -
  CG479_RS22525 (CG479_009950) - 1945690..1945929 (+) 240 WP_237701325.1 SGNH/GDSL hydrolase family protein -
  CG479_RS22530 - 1946209..1946397 (+) 189 WP_237701326.1 hypothetical protein -
  CG479_RS10020 (CG479_009960) - 1946419..1947150 (+) 732 Protein_1879 SDR family oxidoreductase -
  CG479_RS10025 (CG479_009965) abrB 1947575..1947853 (+) 279 WP_012094321.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  CG479_RS10030 (CG479_009970) - 1948072..1948866 (+) 795 WP_012094322.1 LysM peptidoglycan-binding domain-containing protein -
  CG479_RS10035 (CG479_009975) - 1949062..1949283 (+) 222 WP_041809735.1 hypothetical protein -
  CG479_RS10040 (CG479_009980) - 1949416..1951107 (-) 1692 WP_012094323.1 M3 family oligoendopeptidase -
  CG479_RS10045 (CG479_009985) - 1951759..1952391 (+) 633 WP_012094324.1 type 1 glutamine amidotransferase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10433.25 Da        Isoelectric Point: 6.3246

>NTDB_id=252062 CG479_RS10025 WP_012094321.1 1947575..1947853(+) (abrB) [Bacillus cytotoxicus strain CH_13]
MKSTGIIRKVDELGRIVIPKELRDMLDIGIKSPLEIFVENERIVLKKYVPYNTCQITGEVSNDNISLANGKIILSPEGAK
YLIQELENYLVK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=252062 CG479_RS10025 WP_012094321.1 1947575..1947853(+) (abrB) [Bacillus cytotoxicus strain CH_13]
ATGAAATCAACTGGAATTATCCGAAAAGTGGATGAACTTGGAAGAATTGTTATCCCAAAAGAATTAAGAGACATGTTAGA
TATTGGCATTAAATCACCTTTGGAAATATTTGTAGAAAATGAAAGAATCGTTTTAAAGAAATATGTACCTTACAACACTT
GTCAAATAACAGGGGAAGTATCGAATGATAATATTTCACTTGCAAATGGTAAAATTATTTTAAGTCCTGAAGGGGCAAAA
TATTTAATTCAAGAGTTAGAGAACTATTTAGTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GPS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

63.333

97.826

0.62

Multiple sequence alignment