Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   CG479_RS07060 Genome accession   NZ_CP024109
Coordinates   1374138..1374740 (-) Length   200 a.a.
NCBI ID   WP_012093762.1    Uniprot ID   A7GN87
Organism   Bacillus cytotoxicus strain CH_13     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1369138..1379740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG479_RS07040 (CG479_007035) dnaD 1369560..1370267 (+) 708 WP_012093758.1 DNA replication protein DnaD -
  CG479_RS07045 (CG479_007040) nth 1370283..1370930 (+) 648 WP_012093759.1 endonuclease III -
  CG479_RS07050 (CG479_007045) - 1370934..1371452 (+) 519 WP_012093760.1 YpoC family protein -
  CG479_RS07055 (CG479_007050) - 1371475..1374072 (-) 2598 WP_012093761.1 PBP1A family penicillin-binding protein -
  CG479_RS07060 (CG479_007055) recU 1374138..1374740 (-) 603 WP_012093762.1 Holliday junction resolvase RecU Machinery gene
  CG479_RS07065 (CG479_007060) - 1374839..1375867 (+) 1029 WP_012093763.1 DUF2515 domain-containing protein -
  CG479_RS07070 (CG479_007065) - 1376332..1376574 (+) 243 WP_012093764.1 hypothetical protein -
  CG479_RS07075 (CG479_007070) - 1376590..1376934 (+) 345 WP_012093765.1 YppE family protein -
  CG479_RS07080 (CG479_007075) - 1376961..1377155 (-) 195 WP_012093766.1 YppF family protein -
  CG479_RS07085 (CG479_007080) - 1377333..1377767 (+) 435 WP_012093767.1 YppG family protein -
  CG479_RS07090 (CG479_007085) - 1377919..1378353 (+) 435 WP_012093768.1 CotD family spore coat protein -
  CG479_RS07095 (CG479_007090) - 1378410..1378964 (+) 555 WP_012093769.1 DUF1273 domain-containing protein -
  CG479_RS07100 (CG479_007095) gpsB 1379062..1379397 (+) 336 WP_012093770.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23411.79 Da        Isoelectric Point: 9.6382

>NTDB_id=252060 CG479_RS07060 WP_012093762.1 1374138..1374740(-) (recU) [Bacillus cytotoxicus strain CH_13]
MTIRYPNGKRYNQALQPQKTKMKKHTYGNRGMSLEEELNETNQYYLSHNIACVHKKPTPLQIVKVDYPARSAAVVREAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTNFPLQNFHLHQIEHMKQVIAHDGIAFVIIKFTLYNEIYLLDAKHVISFWNRK
DTGGRKSITKQEIEEHGSLLSCGYHPRIDYISILDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=252060 CG479_RS07060 WP_012093762.1 1374138..1374740(-) (recU) [Bacillus cytotoxicus strain CH_13]
ATGACCATTCGTTACCCAAACGGAAAAAGATATAATCAAGCTTTACAACCTCAAAAAACAAAAATGAAAAAACATACTTA
TGGTAACAGGGGGATGTCTCTTGAAGAGGAACTAAATGAAACAAATCAATATTATTTGAGTCATAATATTGCCTGTGTAC
ACAAAAAACCAACACCTCTTCAAATTGTAAAAGTGGATTATCCTGCCCGAAGTGCTGCAGTTGTAAGAGAAGCTTATTTT
AAACAGCCTTCTACAACAGATTACAACGGTGTTTATAAGGGTAAATACATTGATTTTGAAGCAAAGGAAACAAAAAATAA
AACAAACTTCCCGCTCCAAAACTTCCATCTCCACCAAATTGAGCATATGAAACAAGTTATTGCTCATGATGGAATTGCAT
TCGTCATTATTAAATTTACACTTTATAACGAAATTTATTTACTCGATGCAAAACACGTTATTTCATTTTGGAATCGCAAA
GATACCGGAGGGAGAAAATCAATTACAAAACAAGAAATTGAGGAACACGGCTCTTTGTTATCATGCGGTTATCATCCTCG
AATCGATTATATTTCTATACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GN87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment