Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HCH_RS23710 Genome accession   NC_007645
Coordinates   5421618..5422838 (+) Length   406 a.a.
NCBI ID   WP_011399017.1    Uniprot ID   Q2SBM1
Organism   Hahella chejuensis KCTC 2396     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5416618..5427838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCH_RS33255 (HCH_05276) - 5418604..5419050 (-) 447 WP_011399014.1 pilin -
  HCH_RS23700 (HCH_05277) - 5419112..5419585 (-) 474 WP_011399015.1 pilin -
  HCH_RS23705 (HCH_05278) pilB 5419902..5421614 (+) 1713 WP_011399016.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HCH_RS23710 (HCH_05279) pilC 5421618..5422838 (+) 1221 WP_011399017.1 type II secretion system F family protein Machinery gene
  HCH_RS23715 (HCH_05280) pilD 5422905..5423783 (+) 879 WP_011399018.1 prepilin peptidase Machinery gene
  HCH_RS23720 (HCH_05281) coaE 5423803..5424429 (+) 627 WP_011399019.1 dephospho-CoA kinase -
  HCH_RS23725 (HCH_05282) yacG 5424419..5424655 (+) 237 WP_011399020.1 DNA gyrase inhibitor YacG -
  HCH_RS23730 (HCH_05283) - 5424706..5425746 (+) 1041 WP_011399021.1 hypothetical protein -
  HCH_RS23735 (HCH_05285) tsaA 5425756..5426475 (+) 720 WP_011399022.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  HCH_RS35120 (HCH_05284) - 5426465..5427019 (-) 555 WP_083769817.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44041.63 Da        Isoelectric Point: 9.4575

>NTDB_id=25205 HCH_RS23710 WP_011399017.1 5421618..5422838(+) (pilC) [Hahella chejuensis KCTC 2396]
MAQAAQKHSTFVWEGTDRKGNKTKGETSGSNVALVKAQLRKQGINPTRVKKKAESILGKRTKKITPFDIAVFTRQMATMM
KAGVPLVQSFDIVADGLEHPSLKELVLDIKNEVAAGNSFAGALKKHPKYFDDLFCNLIDSGEKSGALETMLARVATYLEK
TEILKKKVKKAMTYPIAVLVVAVIVTGILLVKVVPQFQDLFQGFGADLPAFTQMIINISEYLQASWYIILGVIIAAIFSF
SEARRRSPAFSDAVDKYILKFPIMGDILHKSAVARFARVLSTTFAAGVPLVDALESVAGATGNAVFRKAVIKIRDDVSSG
TQLQYSMKTTGVFPVMAIQLTSIGEESGALDDMLEKVADHYEAEVDDAVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIF
QLGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=25205 HCH_RS23710 WP_011399017.1 5421618..5422838(+) (pilC) [Hahella chejuensis KCTC 2396]
ATGGCCCAAGCAGCACAAAAACATTCAACCTTTGTCTGGGAAGGCACTGACCGAAAGGGGAACAAGACCAAGGGAGAAAC
GAGCGGGTCAAATGTCGCCCTTGTGAAAGCACAGCTGAGAAAGCAAGGAATCAATCCCACCAGAGTCAAAAAGAAAGCAG
AAAGTATTTTAGGAAAAAGAACCAAGAAGATAACCCCGTTTGACATTGCAGTATTTACTCGTCAAATGGCGACGATGATG
AAAGCCGGAGTTCCTTTGGTACAATCGTTCGATATCGTCGCAGATGGGCTGGAGCACCCCTCTCTAAAAGAGCTGGTTTT
AGATATTAAAAACGAGGTTGCAGCAGGGAATAGCTTTGCTGGAGCCCTGAAAAAGCATCCCAAGTATTTTGATGACCTGT
TTTGTAACCTAATCGATTCCGGCGAGAAATCGGGGGCTCTCGAAACAATGCTGGCTCGAGTCGCAACGTATCTCGAAAAA
ACAGAGATTCTGAAGAAAAAAGTCAAAAAAGCAATGACATATCCTATTGCAGTACTTGTTGTCGCAGTAATTGTAACAGG
TATATTGCTGGTTAAAGTCGTGCCTCAGTTTCAAGACCTGTTTCAAGGTTTCGGCGCGGACTTACCCGCATTCACCCAAA
TGATTATTAATATTTCAGAATACCTACAGGCATCTTGGTACATTATTCTCGGCGTTATTATTGCCGCGATATTCAGCTTC
AGTGAAGCTAGACGAAGATCACCAGCATTTTCCGATGCAGTCGACAAATATATATTAAAGTTTCCCATCATGGGCGACAT
CTTGCATAAGTCAGCGGTCGCTCGCTTCGCCAGAGTTCTATCAACAACTTTTGCCGCTGGCGTGCCGCTTGTTGACGCAT
TGGAATCAGTAGCCGGCGCCACTGGAAACGCGGTGTTCAGAAAAGCTGTAATTAAGATACGCGACGACGTATCCTCGGGA
ACACAATTGCAATACAGCATGAAAACTACAGGCGTATTTCCTGTTATGGCAATACAGCTAACTTCAATCGGCGAAGAGTC
AGGCGCTCTTGATGACATGTTGGAGAAAGTCGCCGATCACTATGAGGCTGAAGTAGACGATGCTGTAGACAACCTTACTG
CTCTTATGGAGCCAATGATTATGGCTGTTTTAGGTGTTTTAGTTGGCGGTCTAATTATAGGTATGTACCTCCCCATTTTC
CAATTGGGCTCCGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2SBM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

68.966

100

0.69
  pilC Acinetobacter baumannii D1279779

61.235

99.754

0.611
  pilC Acinetobacter baylyi ADP1

60.591

100

0.606
  pilC Legionella pneumophila strain ERS1305867

55.416

97.783

0.542
  pilG Neisseria gonorrhoeae MS11

43.103

100

0.431
  pilG Neisseria meningitidis 44/76-A

43.103

100

0.431
  pilC Vibrio campbellii strain DS40M4

39.066

100

0.392
  pilC Vibrio cholerae strain A1552

40.05

97.783

0.392

Multiple sequence alignment