Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   CG479_RS02140 Genome accession   NZ_CP024109
Coordinates   406187..406987 (+) Length   266 a.a.
NCBI ID   WP_041810201.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_13     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 401187..411987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG479_RS02135 (CG479_002125) - 403383..405572 (-) 2190 WP_011983474.1 DNA topoisomerase III -
  CG479_RS02140 (CG479_002130) ceuB 406187..406987 (+) 801 WP_041810201.1 ABC transporter permease Machinery gene
  CG479_RS02145 (CG479_002135) - 406977..407948 (+) 972 WP_011983476.1 iron chelate uptake ABC transporter family permease subunit -
  CG479_RS02150 (CG479_002140) - 407942..408700 (+) 759 WP_011983477.1 ABC transporter ATP-binding protein -
  CG479_RS02155 (CG479_002145) - 408775..409722 (+) 948 WP_011983478.1 siderophore ABC transporter substrate-binding protein -
  CG479_RS02160 (CG479_002150) thiM 410078..410887 (+) 810 WP_011983479.1 hydroxyethylthiazole kinase -
  CG479_RS02165 (CG479_002155) thiE 410901..411554 (+) 654 WP_011983480.1 thiamine phosphate synthase -
  CG479_RS21795 - 411600..411743 (+) 144 WP_157671232.1 hypothetical protein -

Sequence


Protein


Download         Length: 266 a.a.        Molecular weight: 29255.47 Da        Isoelectric Point: 10.4488

>NTDB_id=252047 CG479_RS02140 WP_041810201.1 406187..406987(+) (ceuB) [Bacillus cytotoxicus strain CH_13]
MKKRYLFIMLIVLSVASIFIGVKDVSLTDVLHWNQEKMQIVFISRLPRLISIIVAGVSLSISGLIMQQLSRNKFVSPTTA
GTMDSAKLGVLVSLMLFTTASPLEKMFIAFIFALAGTFLFMQILKRIKFKDAIFIPLVIIAFLYANRFTVAGMGEDFAAN
LGMNYNRVLNIGLIIVSLISALVVLTVGMIPFLGLIIPNIVSIYRGDHLKNSLPHTALLGAVFVLACDILGRVVIYPYEI
SIGLTVGVIGSGIFLYLLMRRNAYAT

Nucleotide


Download         Length: 801 bp        

>NTDB_id=252047 CG479_RS02140 WP_041810201.1 406187..406987(+) (ceuB) [Bacillus cytotoxicus strain CH_13]
ATGAAAAAAAGATATTTATTTATCATGCTTATTGTTTTATCGGTTGCATCTATTTTTATTGGTGTAAAAGATGTGAGTCT
AACAGATGTTTTGCATTGGAATCAAGAGAAAATGCAAATTGTATTTATCAGTAGATTACCACGTCTCATTAGTATTATTG
TTGCTGGTGTCAGTTTAAGTATAAGTGGTTTAATTATGCAGCAACTGAGCAGAAATAAGTTTGTATCTCCAACAACTGCG
GGAACGATGGATAGTGCAAAGTTGGGCGTTTTAGTCTCCTTAATGTTATTTACGACAGCAAGCCCGCTTGAAAAAATGTT
TATCGCATTTATTTTTGCGCTAGCTGGTACATTTTTGTTTATGCAAATTTTAAAGCGAATTAAATTTAAAGATGCCATTT
TTATTCCGCTTGTAATCATCGCCTTTTTATATGCAAATCGTTTTACCGTTGCTGGAATGGGGGAAGATTTTGCAGCGAAT
TTAGGAATGAATTACAATCGAGTGCTAAATATTGGGCTTATTATCGTTTCTCTCATCTCTGCATTAGTTGTTTTAACTGT
TGGGATGATTCCATTTTTAGGACTTATTATTCCAAATATCGTTTCAATTTATCGCGGAGATCATTTGAAAAATAGTTTAC
CTCATACTGCCTTGTTAGGAGCTGTTTTTGTACTAGCTTGCGATATACTTGGTAGGGTCGTAATTTATCCGTATGAAATT
TCGATTGGTCTTACAGTAGGAGTGATCGGAAGCGGAATCTTCCTTTATTTATTAATGAGGAGAAACGCATATGCAACATA
G


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

44.409

100

0.523


Multiple sequence alignment