Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CG480_RS16340 Genome accession   NZ_CP024107
Coordinates   3112626..3113420 (-) Length   264 a.a.
NCBI ID   WP_012095325.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_15     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3107626..3118420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG480_RS16310 (CG480_016285) yqiS 3107637..3108536 (-) 900 WP_012095320.1 phosphate butyryltransferase -
  CG480_RS16320 (CG480_016295) - 3108732..3110804 (-) 2073 WP_087095328.1 sigma-54 interaction domain-containing protein -
  CG480_RS16325 (CG480_016300) - 3110942..3111175 (+) 234 WP_012095322.1 DUF2627 domain-containing protein -
  CG480_RS16330 (CG480_016305) - 3111272..3112000 (-) 729 WP_012095323.1 glycerophosphodiester phosphodiesterase -
  CG480_RS16335 (CG480_016310) - 3112050..3112196 (+) 147 WP_012095324.1 YycC family protein -
  CG480_RS16340 (CG480_016315) spo0A 3112626..3113420 (-) 795 WP_012095325.1 sporulation transcription factor Spo0A Regulator
  CG480_RS16350 (CG480_016320) spoIVB 3113706..3115004 (-) 1299 WP_012095326.1 SpoIVB peptidase -
  CG480_RS16355 (CG480_016325) recN 3115124..3116863 (-) 1740 WP_012095327.1 DNA repair protein RecN Machinery gene
  CG480_RS16360 (CG480_016330) argR 3117111..3117560 (-) 450 WP_012095328.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29453.21 Da        Isoelectric Point: 7.4717

>NTDB_id=252021 CG480_RS16340 WP_012095325.1 3112626..3113420(-) (spo0A) [Bacillus cytotoxicus strain CH_15]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKEKQPDVLVLDIIMPHLDGLAVLEKMRHIERLKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKTNAAIKRPLPSFRSVTTADGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=252021 CG480_RS16340 WP_012095325.1 3112626..3113420(-) (spo0A) [Bacillus cytotoxicus strain CH_15]
GTGGAGAAAATCAAAGTATGTCTTGTGGATGATAATAAAGAATTGGTATCAATGCTAGAAAGTTATGTTGCTGCCCAAGA
TGATATGGAAGTAATCGGAACGGCTTATAATGGTCAAGAATGTTTAAATTTATTAAAAGAAAAACAACCAGATGTACTCG
TTTTAGACATTATTATGCCACATTTAGATGGCCTAGCAGTACTGGAGAAAATGCGACATATTGAACGACTAAAACAACCG
AATGTTATTATGTTAACAGCATTTGGGCAAGAAGATGTGACAAAGAAAGCAGTTGATCTAGGAGCTTCTTATTTCATATT
AAAACCATTTGATATGGAGAATTTAACGAGTCATATTCGTCAAGTAAGTGGTAAAACAAATGCTGCGATAAAACGCCCAC
TACCATCTTTCCGATCGGTAACAACAGCAGATGGAAAACCGAAAAATTTAGATGCGAGTATTACGAGCATTATTCACGAA
ATTGGTGTCCCAGCTCATATTAAAGGATATATGTATTTACGCGAAGCAATTTCTATGGTGTACAACGACATTGAGTTGTT
AGGATCTATTACGAAAGTATTATATCCAGATATCGCTAAGAAATATAATACAACTGCAAGTCGTGTGGAACGTGCAATTC
GACATGCGATTGAAGTAGCATGGAGCCGTGGGAATATTGATTCTATCTCATCTTTATTCGGTTATACCGTATCCATGTCA
AAAGCAAAACCGACGAATTCCGAATTTATTGCAATGGTTGCGGATAAATTAAGGCTTGAACATAAGGCGAGTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

81.648

100

0.826

Multiple sequence alignment