Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | CG481_RS16195 | Genome accession | NZ_CP024104 |
| Coordinates | 3079597..3080181 (-) | Length | 194 a.a. |
| NCBI ID | WP_012095387.1 | Uniprot ID | - |
| Organism | Bacillus cytotoxicus strain CH_23 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3076700..3121649 | 3079597..3080181 | within | 0 |
Gene organization within MGE regions
Location: 3076700..3121649
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CG481_RS16170 (CG481_016100) | comGG | 3076700..3077074 (-) | 375 | WP_048723614.1 | competence type IV pilus minor pilin ComGG | - |
| CG481_RS16175 (CG481_016105) | comGF | 3077071..3077541 (-) | 471 | WP_041810544.1 | competence type IV pilus minor pilin ComGF | - |
| CG481_RS23860 | - | 3077520..3077837 (-) | 318 | WP_235436438.1 | type II secretion system protein | - |
| CG481_RS16180 (CG481_016110) | comGD | 3077815..3078261 (-) | 447 | Protein_3109 | competence type IV pilus minor pilin ComGD | - |
| CG481_RS16185 (CG481_016115) | comGC | 3078258..3078557 (-) | 300 | WP_012095385.1 | competence type IV pilus major pilin ComGC | - |
| CG481_RS16190 (CG481_016120) | comGB | 3078570..3079610 (-) | 1041 | WP_041810011.1 | competence type IV pilus assembly protein ComGB | - |
| CG481_RS16195 (CG481_016125) | comGA | 3079597..3080181 (-) | 585 | WP_012095387.1 | ATPase, T2SS/T4P/T4SS family | Machinery gene |
| CG481_RS16200 (CG481_016130) | - | 3080075..3080671 (-) | 597 | WP_338142142.1 | DUF1071 domain-containing protein | - |
| CG481_RS16205 (CG481_016135) | - | 3080668..3081150 (-) | 483 | WP_012095420.1 | siphovirus Gp157 family protein | - |
| CG481_RS16210 (CG481_016140) | - | 3081214..3081582 (-) | 369 | WP_012095421.1 | helix-turn-helix domain-containing protein | - |
| CG481_RS16215 (CG481_016145) | - | 3081605..3081871 (-) | 267 | WP_012095422.1 | hypothetical protein | - |
| CG481_RS22885 | - | 3082019..3082162 (-) | 144 | WP_157671227.1 | hypothetical protein | - |
| CG481_RS16220 (CG481_016150) | - | 3082191..3082385 (-) | 195 | WP_048723899.1 | hypothetical protein | - |
| CG481_RS23865 (CG481_016155) | - | 3082414..3083190 (-) | 777 | WP_048723896.1 | ORF6C domain-containing protein | - |
| CG481_RS16230 (CG481_016160) | - | 3083187..3083375 (-) | 189 | WP_012095426.1 | helix-turn-helix transcriptional regulator | - |
| CG481_RS16235 (CG481_016165) | - | 3083648..3084070 (+) | 423 | WP_048723893.1 | helix-turn-helix domain-containing protein | - |
| CG481_RS16240 (CG481_016170) | - | 3084085..3084510 (+) | 426 | WP_012095428.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CG481_RS16245 (CG481_016175) | - | 3084524..3085948 (+) | 1425 | WP_012095429.1 | recombinase family protein | - |
| CG481_RS23245 | - | 3086044..3086208 (+) | 165 | WP_164468640.1 | hypothetical protein | - |
| CG481_RS16250 (CG481_016180) | - | 3086325..3086897 (+) | 573 | WP_012095388.1 | DUF4352 domain-containing protein | - |
| CG481_RS16255 (CG481_016185) | - | 3087208..3087648 (+) | 441 | WP_012095389.1 | hypothetical protein | - |
| CG481_RS16260 (CG481_016190) | - | 3087723..3088544 (-) | 822 | WP_012095390.1 | GH25 family lysozyme | - |
| CG481_RS16265 (CG481_016195) | - | 3088544..3088984 (-) | 441 | WP_012095391.1 | phage holin family protein | - |
| CG481_RS16270 (CG481_016200) | - | 3089019..3093512 (-) | 4494 | WP_094398326.1 | phage tail spike protein | - |
| CG481_RS16275 (CG481_016205) | - | 3093513..3095006 (-) | 1494 | WP_048723927.1 | distal tail protein Dit | - |
| CG481_RS16280 (CG481_016210) | - | 3095019..3097946 (-) | 2928 | WP_012095394.1 | phage tail tape measure protein | - |
| CG481_RS16285 (CG481_016215) | - | 3097952..3098149 (-) | 198 | WP_235436463.1 | hypothetical protein | - |
| CG481_RS16290 (CG481_016220) | - | 3098254..3098691 (-) | 438 | WP_012095396.1 | hypothetical protein | - |
| CG481_RS16295 (CG481_016225) | - | 3098737..3099369 (-) | 633 | WP_048723925.1 | hypothetical protein | - |
| CG481_RS16300 (CG481_016230) | - | 3099387..3099767 (-) | 381 | WP_048723923.1 | hypothetical protein | - |
| CG481_RS16305 (CG481_016235) | - | 3099764..3100180 (-) | 417 | WP_012095399.1 | hypothetical protein | - |
| CG481_RS16310 (CG481_016240) | - | 3100164..3100523 (-) | 360 | WP_012095400.1 | hypothetical protein | - |
| CG481_RS16315 (CG481_016245) | - | 3100505..3100843 (-) | 339 | WP_012095401.1 | head-tail connector protein | - |
| CG481_RS16320 (CG481_016250) | - | 3100880..3101722 (-) | 843 | WP_012095402.1 | hypothetical protein | - |
| CG481_RS16325 (CG481_016255) | - | 3101736..3102326 (-) | 591 | WP_012095403.1 | DUF4355 domain-containing protein | - |
| CG481_RS16330 (CG481_016260) | - | 3102396..3103421 (-) | 1026 | WP_012095404.1 | minor capsid protein | - |
| CG481_RS16335 (CG481_016265) | - | 3103408..3104763 (-) | 1356 | WP_012095405.1 | phage portal protein | - |
| CG481_RS16340 (CG481_016270) | - | 3104775..3106079 (-) | 1305 | WP_012095406.1 | PBSX family phage terminase large subunit | - |
| CG481_RS16345 (CG481_016275) | - | 3106066..3106497 (-) | 432 | WP_048723920.1 | terminase small subunit | - |
| CG481_RS16350 (CG481_016280) | - | 3107261..3107506 (-) | 246 | WP_048723940.1 | helix-turn-helix domain-containing protein | - |
| CG481_RS23250 | - | 3107503..3107670 (-) | 168 | WP_164468646.1 | hypothetical protein | - |
| CG481_RS22890 | - | 3107740..3107907 (-) | 168 | WP_157671230.1 | hypothetical protein | - |
| CG481_RS16355 (CG481_016285) | - | 3107910..3108290 (-) | 381 | WP_048723918.1 | ArpU family transcriptional regulator | - |
| CG481_RS16360 (CG481_016290) | - | 3108295..3108582 (-) | 288 | WP_048723916.1 | hypothetical protein | - |
| CG481_RS23255 | - | 3108625..3108792 (-) | 168 | WP_164468645.1 | hypothetical protein | - |
| CG481_RS22895 | - | 3108806..3108946 (-) | 141 | WP_157671229.1 | hypothetical protein | - |
| CG481_RS16365 (CG481_016295) | - | 3108962..3109213 (-) | 252 | WP_048723938.1 | helix-turn-helix domain-containing protein | - |
| CG481_RS22900 | - | 3109300..3109446 (-) | 147 | WP_157671228.1 | hypothetical protein | - |
| CG481_RS16370 (CG481_016300) | - | 3109465..3109749 (-) | 285 | WP_012095411.1 | hypothetical protein | - |
| CG481_RS16375 (CG481_016305) | - | 3109850..3110059 (+) | 210 | WP_048723913.1 | hypothetical protein | - |
| CG481_RS16380 (CG481_016310) | - | 3110120..3110551 (-) | 432 | WP_048723912.1 | hypothetical protein | - |
| CG481_RS16390 (CG481_016320) | - | 3110806..3111339 (-) | 534 | WP_048723909.1 | hypothetical protein | - |
| CG481_RS16395 (CG481_016325) | - | 3111382..3111588 (-) | 207 | WP_048723907.1 | hypothetical protein | - |
| CG481_RS16400 (CG481_016330) | - | 3111667..3111867 (-) | 201 | WP_048723905.1 | hypothetical protein | - |
| CG481_RS16405 (CG481_016335) | - | 3111904..3112476 (-) | 573 | WP_048723936.1 | dUTP diphosphatase | - |
| CG481_RS16410 (CG481_016340) | - | 3112630..3113421 (-) | 792 | WP_094398390.1 | hypothetical protein | - |
| CG481_RS16415 (CG481_016345) | - | 3113423..3113605 (-) | 183 | WP_162533109.1 | hypothetical protein | - |
| CG481_RS16420 (CG481_016350) | - | 3113574..3113801 (-) | 228 | WP_048723903.1 | hypothetical protein | - |
| CG481_RS16425 (CG481_016355) | - | 3113812..3114714 (-) | 903 | WP_313928212.1 | ATP-binding protein | - |
| CG481_RS16430 (CG481_016360) | - | 3114614..3115417 (-) | 804 | WP_048723901.1 | conserved phage C-terminal domain-containing protein | - |
| CG481_RS16435 (CG481_016365) | - | 3115418..3115687 (-) | 270 | WP_012095418.1 | hypothetical protein | - |
| CG481_RS16440 (CG481_016370) | - | 3115701..3116372 (-) | 672 | WP_012095419.1 | DUF1071 domain-containing protein | - |
| CG481_RS16445 (CG481_016375) | - | 3116369..3116851 (-) | 483 | WP_012095420.1 | siphovirus Gp157 family protein | - |
| CG481_RS16450 (CG481_016380) | - | 3116915..3117283 (-) | 369 | WP_012095421.1 | helix-turn-helix domain-containing protein | - |
| CG481_RS16455 (CG481_016385) | - | 3117306..3117572 (-) | 267 | WP_012095422.1 | hypothetical protein | - |
| CG481_RS22905 | - | 3117720..3117863 (-) | 144 | WP_157671227.1 | hypothetical protein | - |
| CG481_RS16460 (CG481_016390) | - | 3117892..3118086 (-) | 195 | WP_048723899.1 | hypothetical protein | - |
| CG481_RS23870 (CG481_016395) | - | 3118115..3118891 (-) | 777 | WP_048723896.1 | ORF6C domain-containing protein | - |
| CG481_RS16470 (CG481_016400) | - | 3118888..3119076 (-) | 189 | WP_012095426.1 | helix-turn-helix transcriptional regulator | - |
| CG481_RS16475 (CG481_016405) | - | 3119349..3119771 (+) | 423 | WP_048723893.1 | helix-turn-helix domain-containing protein | - |
| CG481_RS16480 (CG481_016410) | - | 3119786..3120211 (+) | 426 | WP_012095428.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CG481_RS16485 (CG481_016415) | - | 3120225..3121649 (+) | 1425 | WP_012095429.1 | recombinase family protein | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 21858.48 Da Isoelectric Point: 9.0444
>NTDB_id=251975 CG481_RS16195 WP_012095387.1 3079597..3080181(-) (comGA) [Bacillus cytotoxicus strain CH_23]
MYALLEVAKKGQTRRIVTLEDPVEKRKNGLLQIQINEKAGITYETGLKAILRHDPDIILVGEIRDEETAKVAVRASLTGH
LVMTTLHTNDAKGAVLRLMDFGISRQEIEQSLLAVAAQRLVELKCPFCKGKCSPLCKSIRQVRQASIYELLYGHELKKAI
REANGERVVYRYETLQSSLKKGYALGFLEEDVYV
MYALLEVAKKGQTRRIVTLEDPVEKRKNGLLQIQINEKAGITYETGLKAILRHDPDIILVGEIRDEETAKVAVRASLTGH
LVMTTLHTNDAKGAVLRLMDFGISRQEIEQSLLAVAAQRLVELKCPFCKGKCSPLCKSIRQVRQASIYELLYGHELKKAI
REANGERVVYRYETLQSSLKKGYALGFLEEDVYV
Nucleotide
Download Length: 585 bp
>NTDB_id=251975 CG481_RS16195 WP_012095387.1 3079597..3080181(-) (comGA) [Bacillus cytotoxicus strain CH_23]
ATGTATGCGTTATTAGAAGTTGCCAAAAAAGGTCAAACACGCCGGATTGTTACATTGGAAGATCCGGTGGAGAAAAGAAA
GAACGGTTTATTACAAATTCAAATTAATGAAAAAGCAGGGATTACGTATGAGACAGGTTTAAAGGCAATTTTACGGCATG
ACCCAGATATTATTTTAGTGGGGGAAATTCGTGATGAAGAAACAGCAAAAGTGGCTGTACGTGCAAGTTTAACAGGTCAT
TTAGTAATGACAACGCTGCATACAAATGATGCGAAAGGTGCTGTATTGCGCTTGATGGATTTTGGAATTAGCAGACAGGA
AATTGAACAGTCGTTATTAGCTGTAGCCGCTCAGCGCCTTGTAGAGTTGAAATGTCCGTTTTGTAAAGGGAAGTGTTCAC
CATTATGTAAATCGATACGCCAAGTACGGCAAGCAAGCATTTATGAGTTGCTATATGGTCATGAATTGAAGAAAGCCATT
CGCGAAGCGAATGGCGAACGTGTGGTGTATCGCTATGAAACATTACAATCTTCATTAAAGAAAGGCTATGCTTTAGGATT
TTTAGAAGAGGATGTTTATGTTTAA
ATGTATGCGTTATTAGAAGTTGCCAAAAAAGGTCAAACACGCCGGATTGTTACATTGGAAGATCCGGTGGAGAAAAGAAA
GAACGGTTTATTACAAATTCAAATTAATGAAAAAGCAGGGATTACGTATGAGACAGGTTTAAAGGCAATTTTACGGCATG
ACCCAGATATTATTTTAGTGGGGGAAATTCGTGATGAAGAAACAGCAAAAGTGGCTGTACGTGCAAGTTTAACAGGTCAT
TTAGTAATGACAACGCTGCATACAAATGATGCGAAAGGTGCTGTATTGCGCTTGATGGATTTTGGAATTAGCAGACAGGA
AATTGAACAGTCGTTATTAGCTGTAGCCGCTCAGCGCCTTGTAGAGTTGAAATGTCCGTTTTGTAAAGGGAAGTGTTCAC
CATTATGTAAATCGATACGCCAAGTACGGCAAGCAAGCATTTATGAGTTGCTATATGGTCATGAATTGAAGAAAGCCATT
CGCGAAGCGAATGGCGAACGTGTGGTGTATCGCTATGAAACATTACAATCTTCATTAAAGAAAGGCTATGCTTTAGGATT
TTTAGAAGAGGATGTTTATGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
58.763 |
100 |
0.588 |
| pilB | Vibrio campbellii strain DS40M4 |
36 |
100 |
0.371 |