Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   CG481_RS06065 Genome accession   NZ_CP024104
Coordinates   1172844..1173167 (-) Length   107 a.a.
NCBI ID   WP_011984082.1    Uniprot ID   A7GMH1
Organism   Bacillus cytotoxicus strain CH_23     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1167844..1178167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG481_RS06035 (CG481_006015) - 1168186..1168393 (+) 208 Protein_1091 hypothetical protein -
  CG481_RS06040 (CG481_006020) - 1168551..1169822 (+) 1272 WP_011984077.1 D-alanyl-D-alanine carboxypeptidase family protein -
  CG481_RS06045 (CG481_006025) sipW 1169954..1170529 (+) 576 WP_011984078.1 signal peptidase I SipW -
  CG481_RS06050 (CG481_006030) - 1170575..1171165 (+) 591 WP_011984079.1 TasA family protein -
  CG481_RS06055 (CG481_006035) - 1171256..1171942 (+) 687 WP_011984080.1 DUF4047 domain-containing protein -
  CG481_RS06060 (CG481_006040) calY 1172173..1172765 (+) 593 Protein_1096 biofilm matrix protein CalY -
  CG481_RS06065 (CG481_006045) sinR 1172844..1173167 (-) 324 WP_011984082.1 helix-turn-helix domain-containing protein Regulator
  CG481_RS06070 (CG481_006050) - 1173245..1173376 (-) 132 WP_011984083.1 anti-repressor SinI family protein -
  CG481_RS06075 (CG481_006055) - 1173738..1176124 (+) 2387 Protein_1099 immune inhibitor A domain-containing protein -
  CG481_RS06080 (CG481_006060) - 1176331..1177695 (+) 1365 WP_011984085.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12380.21 Da        Isoelectric Point: 8.6049

>NTDB_id=251961 CG481_RS06065 WP_011984082.1 1172844..1173167(-) (sinR) [Bacillus cytotoxicus strain CH_23]
MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDTLLHDTTPLENQLDSEWTHLV
KEAMNSGVSKEQFREFIEFSKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=251961 CG481_RS06065 WP_011984082.1 1172844..1173167(-) (sinR) [Bacillus cytotoxicus strain CH_23]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAGAGGGATTTCTTTAACAGAACTTGCTGAAAAGGCCGGTGTTGC
AAAGTCCTACATTAGCTCCATTGAACGTAATTTACAACAAAATCCGTCCATTCAATTTTTAGAAAAAATCGCAGCCGTTC
TGCAAATACCAATTGACACACTTCTTCATGACACAACACCGTTAGAAAATCAATTAGACTCTGAATGGACACACCTTGTT
AAAGAAGCAATGAACTCTGGTGTCTCAAAAGAACAATTCCGTGAATTCATTGAGTTTAGTAAATGGAAACAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-61)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GMH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

64.22

100

0.654

Multiple sequence alignment