Detailed information    

insolico Bioinformatically predicted

Overview


Name   addA   Type   Machinery gene
Locus tag   CG481_RS05300 Genome accession   NZ_CP024104
Coordinates   1034013..1037738 (+) Length   1241 a.a.
NCBI ID   WP_048723054.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_23     
Function   homologous recombination; plasmid transformation (predicted from homology)   
Homologous recombination

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 985701..1042571 1034013..1037738 within 0


Gene organization within MGE regions


Location: 985701..1042571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG481_RS05000 (CG481_004985) aceA 985701..986978 (+) 1278 WP_011983943.1 isocitrate lyase -
  CG481_RS05005 (CG481_004990) - 987309..987512 (+) 204 WP_011983944.1 cold-shock protein -
  CG481_RS05010 (CG481_004995) - 987910..988107 (+) 198 Protein_891 competence protein ComK -
  CG481_RS05015 (CG481_005000) - 988150..989583 (-) 1434 WP_016716785.1 recombinase family protein -
  CG481_RS05020 (CG481_005005) - 989615..990052 (-) 438 WP_016716786.1 ImmA/IrrE family metallo-endopeptidase -
  CG481_RS05025 (CG481_005010) - 990075..990482 (-) 408 WP_016716787.1 helix-turn-helix domain-containing protein -
  CG481_RS05030 (CG481_005015) - 990760..990960 (+) 201 WP_016716788.1 helix-turn-helix domain-containing protein -
  CG481_RS23035 - 990957..991127 (+) 171 WP_016716789.1 hypothetical protein -
  CG481_RS23040 - 991139..991291 (+) 153 WP_016716790.1 hypothetical protein -
  CG481_RS05035 (CG481_005020) - 991307..991657 (+) 351 WP_048722250.1 YqaI family protein -
  CG481_RS05040 (CG481_005025) - 991747..992064 (+) 318 WP_016716792.1 hypothetical protein -
  CG481_RS05050 (CG481_005035) - 992214..992405 (+) 192 WP_016716793.1 hypothetical protein -
  CG481_RS05055 (CG481_005040) - 992411..993112 (+) 702 WP_016716794.1 AAA family ATPase -
  CG481_RS05060 (CG481_005045) - 993112..993588 (+) 477 WP_016716795.1 DUF669 domain-containing protein -
  CG481_RS05065 (CG481_005050) - 993693..996047 (+) 2355 WP_016716796.1 phage/plasmid primase, P4 family -
  CG481_RS05070 (CG481_005055) - 996313..996741 (+) 429 WP_016716797.1 hypothetical protein -
  CG481_RS05075 (CG481_005060) - 996744..997283 (+) 540 WP_016716798.1 ERCC4 domain-containing protein -
  CG481_RS05080 (CG481_005065) - 997285..997569 (+) 285 WP_016716799.1 hypothetical protein -
  CG481_RS05085 (CG481_005070) - 997650..997994 (+) 345 WP_016716800.1 hypothetical protein -
  CG481_RS05090 (CG481_005075) - 998078..998278 (+) 201 WP_016716801.1 XtrA/YqaO family protein -
  CG481_RS05095 (CG481_005080) - 998381..999184 (+) 804 WP_016716802.1 hypothetical protein -
  CG481_RS05100 (CG481_005085) - 999208..1000392 (+) 1185 WP_016716803.1 helix-turn-helix domain-containing protein -
  CG481_RS05105 (CG481_005090) - 1000494..1000889 (+) 396 WP_016716804.1 ECF-type sigma factor -
  CG481_RS05110 (CG481_005095) - 1001067..1001981 (+) 915 WP_016716805.1 hypothetical protein -
  CG481_RS05115 (CG481_005100) - 1002043..1002573 (-) 531 WP_016716806.1 type II toxin-antitoxin system HicB family antitoxin -
  CG481_RS05120 (CG481_005105) - 1002669..1002872 (-) 204 WP_016716807.1 type II toxin-antitoxin system HicA family toxin -
  CG481_RS05125 (CG481_005110) - 1003074..1003313 (+) 240 WP_016716808.1 hypothetical protein -
  CG481_RS23510 (CG481_005115) - 1003327..1003533 (+) 207 Protein_916 HNH endonuclease -
  CG481_RS05135 (CG481_005120) - 1003610..1003846 (+) 237 WP_016716810.1 hypothetical protein -
  CG481_RS05140 (CG481_005125) - 1003961..1004347 (+) 387 WP_016716811.1 P27 family phage terminase small subunit -
  CG481_RS05145 (CG481_005130) - 1004344..1006062 (+) 1719 WP_016716812.1 terminase large subunit -
  CG481_RS05150 (CG481_005135) - 1006085..1007254 (+) 1170 WP_016716813.1 phage portal protein -
  CG481_RS05155 (CG481_005140) - 1007247..1007819 (+) 573 WP_016716814.1 HK97 family phage prohead protease -
  CG481_RS05160 (CG481_005145) - 1007812..1008984 (+) 1173 WP_016716815.1 phage major capsid protein -
  CG481_RS05165 (CG481_005150) - 1009002..1009181 (+) 180 WP_016716816.1 hypothetical protein -
  CG481_RS05170 (CG481_005155) - 1009174..1009467 (+) 294 WP_016716817.1 hypothetical protein -
  CG481_RS05175 (CG481_005160) - 1009454..1009798 (+) 345 WP_016716818.1 phage head closure protein -
  CG481_RS05180 (CG481_005165) - 1009791..1010147 (+) 357 WP_016716819.1 HK97 gp10 family phage protein -
  CG481_RS05185 (CG481_005170) - 1010144..1010473 (+) 330 WP_016716820.1 hypothetical protein -
  CG481_RS05190 (CG481_005175) - 1010474..1011067 (+) 594 WP_048722261.1 major tail protein -
  CG481_RS05195 (CG481_005180) - 1011074..1011430 (+) 357 WP_016716822.1 hypothetical protein -
  CG481_RS05200 (CG481_005185) - 1011661..1013118 (+) 1458 Protein_930 DUF2207 domain-containing protein -
  CG481_RS05205 (CG481_005190) - 1013343..1015523 (+) 2181 WP_016716824.1 phage tail protein -
  CG481_RS05210 (CG481_005195) - 1015565..1017040 (+) 1476 WP_016716825.1 distal tail protein Dit -
  CG481_RS05215 (CG481_005200) - 1017037..1021473 (+) 4437 WP_420920757.1 phage tail spike protein -
  CG481_RS24255 - 1021470..1021730 (+) 261 WP_420920758.1 hypothetical protein -
  CG481_RS05220 (CG481_005205) - 1021753..1022202 (+) 450 WP_016716827.1 hypothetical protein -
  CG481_RS05225 (CG481_005210) - 1022372..1022608 (+) 237 WP_000398745.1 hemolysin XhlA family protein -
  CG481_RS05230 (CG481_005215) - 1022608..1022847 (+) 240 WP_016716828.1 hypothetical protein -
  CG481_RS05235 (CG481_005220) - 1022844..1023908 (+) 1065 WP_016716829.1 N-acetylmuramoyl-L-alanine amidase -
  CG481_RS05240 (CG481_005225) - 1023947..1024489 (-) 543 WP_016716830.1 hypothetical protein -
  CG481_RS05250 (CG481_005235) - 1024872..1025720 (+) 849 WP_016716831.1 AraC family transcriptional regulator -
  CG481_RS05255 (CG481_005240) - 1026025..1026387 (-) 363 WP_016716833.1 hypothetical protein -
  CG481_RS05260 (CG481_005245) - 1026449..1026781 (-) 333 WP_016716834.1 hypothetical protein -
  CG481_RS05265 (CG481_005250) - 1026860..1027108 (-) 249 WP_048722275.1 hypothetical protein -
  CG481_RS05270 (CG481_005255) - 1027123..1027329 (-) 207 Protein_944 helix-turn-helix domain-containing protein -
  CG481_RS05275 (CG481_005260) - 1027423..1028253 (-) 831 WP_016716837.1 helix-turn-helix domain-containing protein -
  CG481_RS05280 (CG481_005265) - 1028480..1028884 (+) 405 Protein_946 competence protein ComK -
  CG481_RS24010 - 1028963..1029091 (-) 129 WP_275425714.1 hypothetical protein -
  CG481_RS05285 (CG481_005270) - 1029157..1029750 (+) 594 WP_011983946.1 TVP38/TMEM64 family protein -
  CG481_RS05290 (CG481_005275) lepB 1029811..1030377 (+) 567 WP_011983947.1 signal peptidase I -
  CG481_RS05295 (CG481_005280) addB 1030501..1034013 (+) 3513 WP_048722281.1 helicase-exonuclease AddAB subunit AddB Machinery gene
  CG481_RS05300 (CG481_005285) addA 1034013..1037738 (+) 3726 WP_048723054.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  CG481_RS05305 (CG481_005290) - 1037832..1038047 (-) 216 WP_048722283.1 spore germination protein -
  CG481_RS05310 (CG481_005295) - 1038112..1038480 (-) 369 WP_011983951.1 spore germination protein GerPE -
  CG481_RS05315 (CG481_005300) - 1038495..1038689 (-) 195 WP_011983952.1 hypothetical protein -
  CG481_RS05320 (CG481_005305) - 1038694..1039314 (-) 621 WP_011983953.1 spore germination protein GerPC -
  CG481_RS05325 (CG481_005310) - 1039375..1039581 (-) 207 WP_011983954.1 spore germination protein GerPB -
  CG481_RS05330 (CG481_005315) - 1039599..1039820 (-) 222 WP_011983955.1 spore germination protein -
  CG481_RS05335 (CG481_005320) - 1039947..1040126 (-) 180 WP_011983956.1 aspartyl-phosphate phosphatase Spo0E family protein -
  CG481_RS05340 (CG481_005325) - 1040373..1041272 (+) 900 WP_179196689.1 fumarylacetoacetate hydrolase family protein -
  CG481_RS05345 (CG481_005330) - 1041381..1042571 (-) 1191 WP_048722287.1 ornithine--oxo-acid transaminase -

Sequence


Protein


Download         Length: 1241 a.a.        Molecular weight: 143828.41 Da        Isoelectric Point: 5.0777

>NTDB_id=251954 CG481_RS05300 WP_048723054.1 1034013..1037738(+) (addA) [Bacillus cytotoxicus strain CH_23]
MVENWPAKPEGSQWTDDQWKAVVAHGRDILVAAAAGSGKTAVLVERIIKKIINEENPVDVDRLLVVTFTNAAAQEMKNRI
GEALEKVLIEEPSSRHIRKQLSLLNKASISTIHSFCLQVIRSYYYMLDIDPRFRIANQTENELLKEEVLDDILEEEYGME
ENQLFFELVDRYTSDRNDDDLQRMILALHTAAGAHPNPEKWLDRLVEAYNVEGKTIEDLMYASYLLEDVKFQLETATEHI
RKAMELAMLPDGPAPRMETLQADLVLLETLSHAARKSWTSVYEAMQHVSWQTLKRIKKSDYNEDIVKQVDSLRNKAKDEV
KKLQEELFSRKPESFLRDFQEMHPVLGKLVQLVKEFSNRFQAIKRDKGMVDFTDLEHFCLQILSEQGEDGELRPSPVALQ
YRNRFAEVLVDEYQDTNFVQESIIKLVTKDSEQEGNLFMVGDVKQSIYRFRLAEPGLFLGKYKRFTQEGLEGGMKIDLAK
NFRSRHEVLAGTNFIFKQIMGEEVGEIEYDADAELKLGASYPEGEDVAAELLCIHQSEEEVLDGEEGEEVEKAQLEARLI
AQRIKAMVDSGYTVYDRKTNEMRQVQYRDFVILLRSMPWAPQIMEELKLQGIPVYAELATGYFEATEVNIMMNVFRVIDN
PVQDIPLAAVLRSPIVGLNDEELAMLRAHAKKGSFYEVMRSFLRGAPLEGEKELHEKLKWFYHLLQGWREFARQQSLSDL
IWKVYRETGYYDFVGGLPGGKQRQANLRVLYDRARQYEATSFRGLFRFLRFIERILERGDDMGTARALGEQEDVVRIMTI
HKSKGLEFPVVFVAGLGRRFNTQDLMQRFLLHKDFGFGSQFIDPRKRIKYTTLSQLAIKRKMKRELIAEEMRVLYVALTR
AKEKLILIGTVKDKEKEMEKWLDTREHTEWLLPDYVRASASCYLDWIAPSLYRHRDSEILLELGQGTIPNEIYEYDTSWK
VEFVDGKTLLAPEPAQEEKQELLEALREKKAVPLESERKDEVYNRLTWKYEYEDATLQRAKQSVTEIKRNYQSEDGSDTA
FIQKLRAPIRTRPRFMEKKGLTYAERGTAVHAVMQHVDLKQSITIESIQEQIAKMVNKEILTFEQAEEISVERIVAFFES
HLGKRVLEAKSVEREVPFTMMLSAKEAYQNWQGKSEETILVQGVIDCMIEEDDGITLIDFKTDTIEGKFPGGFDQAKPIL
EERYKVQLSLYAKALEKTLQHPVKEKCLYFFDGNHVITIEE

Nucleotide


Download         Length: 3726 bp        

>NTDB_id=251954 CG481_RS05300 WP_048723054.1 1034013..1037738(+) (addA) [Bacillus cytotoxicus strain CH_23]
ATGGTAGAAAATTGGCCAGCAAAACCAGAAGGGAGTCAATGGACAGATGATCAATGGAAAGCTGTTGTGGCACATGGACG
TGATATTTTAGTTGCAGCAGCAGCAGGTTCCGGGAAAACAGCAGTACTCGTTGAACGTATCATTAAAAAGATTATTAATG
AGGAGAATCCGGTAGATGTCGATCGCTTACTCGTTGTAACATTTACGAATGCAGCCGCGCAAGAGATGAAAAATCGAATT
GGGGAAGCGTTAGAAAAAGTATTAATTGAGGAACCGAGTTCACGGCATATACGGAAGCAGCTGAGCTTATTAAATAAGGC
TTCCATCTCAACAATTCATTCTTTTTGTTTACAAGTCATTCGTTCATATTATTACATGCTTGATATCGATCCTCGTTTTC
GCATCGCGAATCAAACGGAAAATGAGTTATTAAAAGAAGAAGTGTTAGATGACATATTAGAAGAAGAGTATGGAATGGAA
GAGAATCAACTATTCTTTGAACTTGTCGATCGCTATACGAGCGACCGTAATGATGATGATTTGCAGCGAATGATTTTGGC
GCTGCATACAGCAGCAGGAGCGCATCCAAATCCAGAAAAGTGGCTTGATAGATTAGTAGAAGCGTATAATGTGGAAGGAA
AAACAATTGAAGATTTAATGTATGCTTCTTATTTATTAGAAGATGTGAAATTCCAGCTTGAAACAGCAACGGAGCACATT
CGAAAAGCAATGGAATTAGCGATGCTTCCCGATGGTCCTGCTCCTCGCATGGAGACATTACAAGCGGATCTCGTTTTACT
AGAAACGCTATCTCATGCTGCGCGCAAGTCGTGGACAAGTGTATATGAAGCAATGCAGCATGTATCGTGGCAAACGTTAA
AGCGTATTAAGAAAAGCGATTATAACGAAGATATTGTGAAACAAGTCGATTCTCTTCGCAATAAAGCAAAAGATGAAGTG
AAGAAATTACAAGAAGAACTGTTTAGTCGTAAACCAGAAAGCTTTTTACGTGATTTTCAAGAGATGCACCCTGTATTAGG
AAAACTCGTGCAGCTTGTTAAAGAGTTTTCGAACCGATTTCAAGCGATAAAACGTGATAAAGGAATGGTTGATTTTACAG
ATTTAGAGCATTTTTGTTTGCAAATTTTAAGCGAGCAAGGTGAAGATGGTGAACTGCGCCCATCGCCAGTTGCACTTCAA
TACCGCAATAGATTTGCGGAAGTTCTCGTTGATGAATATCAAGATACAAACTTCGTTCAAGAATCCATTATTAAACTCGT
AACGAAAGACTCTGAGCAAGAAGGTAATTTGTTTATGGTCGGTGACGTAAAACAGTCTATTTATCGCTTTCGATTAGCAG
AACCCGGCTTGTTTTTAGGAAAATATAAACGTTTTACACAAGAAGGATTAGAAGGCGGAATGAAAATTGATTTAGCGAAA
AACTTCCGTAGTCGTCATGAAGTATTAGCTGGTACAAACTTTATTTTCAAACAAATTATGGGCGAAGAAGTTGGTGAAAT
TGAGTATGATGCTGACGCTGAATTAAAGTTAGGTGCAAGCTATCCAGAAGGAGAAGATGTAGCGGCAGAGTTATTATGCA
TTCACCAATCTGAAGAAGAAGTGCTAGATGGAGAAGAGGGTGAAGAAGTAGAAAAAGCGCAGCTGGAAGCACGTCTCATT
GCGCAGCGCATAAAAGCGATGGTTGACTCAGGATATACAGTATATGACCGGAAAACGAATGAAATGCGTCAGGTCCAATA
TCGCGATTTTGTTATTTTACTGCGCTCGATGCCGTGGGCGCCGCAAATTATGGAAGAATTAAAGCTGCAAGGCATTCCAG
TATACGCAGAACTTGCAACGGGCTATTTTGAAGCGACAGAAGTAAATATTATGATGAATGTTTTCCGCGTTATTGATAAT
CCGGTGCAAGATATTCCGCTAGCAGCTGTACTTCGTTCGCCAATTGTTGGGCTAAATGATGAGGAACTTGCGATGCTTCG
TGCGCATGCAAAGAAAGGCTCTTTTTATGAGGTGATGCGCTCGTTCTTACGAGGAGCACCGCTTGAAGGAGAGAAGGAAC
TGCATGAAAAGCTAAAGTGGTTTTATCACTTACTGCAAGGATGGCGTGAGTTTGCGCGTCAGCAATCTCTTTCTGACTTA
ATTTGGAAAGTGTATCGTGAAACTGGGTATTATGACTTTGTCGGCGGATTACCTGGCGGAAAGCAACGTCAGGCAAACTT
GCGTGTTTTATACGACCGCGCAAGGCAATATGAGGCGACATCATTTAGAGGGTTATTCCGCTTTTTACGCTTTATTGAGC
GCATTTTAGAACGCGGTGATGATATGGGAACTGCAAGAGCTCTTGGAGAGCAAGAAGATGTTGTGCGCATTATGACCATT
CATAAAAGTAAAGGACTAGAGTTCCCAGTTGTGTTTGTGGCAGGGCTCGGCCGTCGTTTTAATACGCAAGATTTAATGCA
GCGTTTCTTATTGCATAAAGACTTCGGATTTGGTTCACAATTTATTGACCCGCGCAAGCGAATTAAATATACGACATTAT
CGCAATTAGCGATTAAACGAAAAATGAAACGCGAGTTAATTGCAGAAGAAATGCGTGTATTATATGTTGCGTTAACGCGT
GCAAAAGAAAAATTAATTTTAATTGGAACGGTGAAAGATAAGGAAAAAGAAATGGAAAAATGGCTTGATACACGGGAGCA
TACAGAATGGTTACTACCAGATTATGTACGCGCTAGTGCGTCATGTTATTTAGATTGGATTGCTCCTTCCTTATACCGAC
ATCGAGATAGTGAAATACTCCTTGAATTAGGACAAGGTACGATTCCAAATGAAATTTATGAATATGATACAAGCTGGAAA
GTAGAATTCGTTGATGGCAAAACGTTACTCGCACCAGAGCCAGCTCAAGAAGAAAAGCAAGAGTTGTTAGAAGCGCTGCG
TGAGAAAAAGGCTGTCCCGTTAGAGAGTGAACGAAAAGATGAAGTATATAATCGATTAACATGGAAATACGAATACGAGG
ATGCAACGCTTCAACGTGCGAAGCAATCTGTTACAGAGATTAAAAGAAATTATCAATCGGAAGATGGAAGTGATACGGCC
TTTATTCAAAAACTACGTGCGCCAATTCGAACACGTCCGCGTTTTATGGAGAAAAAAGGCTTAACATATGCAGAGCGTGG
AACAGCTGTTCATGCCGTTATGCAGCATGTTGATTTGAAGCAATCTATTACAATTGAATCTATTCAAGAGCAAATCGCAA
AAATGGTGAATAAAGAGATCTTAACCTTTGAACAAGCAGAAGAAATCAGTGTCGAAAGAATAGTGGCATTTTTTGAAAGT
CATCTTGGAAAACGAGTGTTAGAAGCGAAAAGTGTTGAGCGAGAAGTACCGTTTACGATGATGCTTTCAGCAAAAGAAGC
GTATCAAAATTGGCAAGGTAAGAGCGAAGAGACGATACTCGTACAAGGGGTTATCGACTGTATGATCGAAGAAGATGATG
GCATTACGTTAATTGACTTTAAAACAGATACAATTGAAGGGAAATTTCCAGGTGGATTCGATCAGGCGAAACCGATTTTA
GAAGAGCGCTATAAAGTACAGCTTTCCTTATATGCTAAAGCACTAGAAAAAACGTTACAACACCCTGTAAAAGAAAAGTG
TTTATACTTTTTTGATGGAAATCATGTGATTACGATTGAGGAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  addA Bacillus subtilis subsp. subtilis str. 168

53.408

100

0.537


Multiple sequence alignment