Detailed information NTG0251938

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: CG482_RS20725
• Genome accession: NZ_CP024101
• Coordinates: 3925428..3926777 (-)
• Length: 449 a.a.
• NCBI ID: WP_048723495.1
• Uniprot ID: -
• Organism: Bacillus cytotoxicus strain CH_25
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3920428..3931777

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG482_RS20705 (CG482_020625)	secA	3920638..3923148 (-)	2511	WP_048723492.1	preprotein translocase subunit SecA	-
CG482_RS20710 (CG482_020630)	hpf	3923511..3924050 (-)	540	WP_012096178.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
CG482_RS20715 (CG482_020640)	-	3924404..3924601 (-)	198	WP_012096179.1	cold shock domain-containing protein	-
CG482_RS20720 (CG482_020645)	-	3924724..3925428 (-)	705	WP_048723493.1	ComF family protein	-
CG482_RS20725 (CG482_020650)	comFA	3925428..3926777 (-)	1350	WP_048723495.1	DEAD/DEAH box helicase	Machinery gene
CG482_RS20730 (CG482_020655)	-	3926903..3928132 (-)	1230	WP_048723497.1	C40 family peptidase	-
CG482_RS20735 (CG482_020660)	-	3928403..3928717 (-)	315	WP_012096183.1	winged helix-turn-helix transcriptional regulator	-
CG482_RS20740 (CG482_020665)	-	3929002..3929844 (-)	843	WP_094398369.1	DegV family protein	-
CG482_RS20745 (CG482_020670)	-	3930235..3930873 (+)	639	WP_012096185.1	YigZ family protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 51530.44 Da
• Isoelectric Point: 9.7376

>NTDB_id=251938 CG482_RS20725 WP_048723495.1 3925428..3926777(-) (comFA) [Bacillus cytotoxicus strain CH_25]
MIQKGRQMLLHELSWSKEQLHDFISRGEIVLEKGIVRKNSNYICQRCGNQEKRLFASFLCKRCNQVCAYCRKCIMMGRVS
ECTMLVRSVCEGKQECFPHALQWKGVLSPGQNRAAKGVVEAIKQKESFFIWAVCGAGKTEMLFSGIDEALKNGKRVCIAT
PRKDVVLELAPRLQEVFPDIPFATLYGGSKEYEKEAMLIVTTTHQLLRYYRAFDVMIIDEIDAFPYVMDHMLHEAVRKAA
KEDASYIYLTATPEEKWKQSVQNGKQKGVIISGRYHRHPLPVPKLKWCGNWRKLLRRKQIPQVLLDWLLIYLQKHYPIFL
FVPHICYVEEVTAVLQRLHHKITGVHAEDPMRKEKVEAFRKGDIPLLITTTILERGVTVANLQVAVLGAEEDIFSESALV
QIAGRVGRSSHNPKGEVIYFHYGKTKAMTAAKKHIQFMNKRAKREGLID

Nucleotide

• Length: 1350 bp

>NTDB_id=251938 CG482_RS20725 WP_048723495.1 3925428..3926777(-) (comFA) [Bacillus cytotoxicus strain CH_25]
ATGATACAAAAAGGAAGACAAATGTTATTGCATGAACTTTCATGGTCAAAAGAACAGTTGCACGATTTCATAAGTAGAGG
GGAGATTGTATTAGAAAAAGGGATTGTTCGAAAAAATTCCAATTATATATGCCAACGTTGCGGGAATCAAGAGAAACGTC
TATTTGCATCATTTTTATGCAAAAGGTGTAATCAAGTATGTGCGTATTGCCGGAAGTGTATTATGATGGGACGAGTAAGC
GAATGTACGATGCTTGTTCGAAGTGTTTGCGAAGGGAAACAAGAATGTTTTCCTCATGCCTTGCAGTGGAAAGGAGTATT
GTCACCGGGGCAAAATAGAGCTGCAAAGGGGGTAGTAGAAGCGATTAAACAGAAAGAGTCCTTTTTTATTTGGGCGGTAT
GTGGTGCTGGAAAAACGGAGATGTTGTTTTCTGGCATAGATGAAGCGCTTAAAAACGGTAAGCGAGTTTGTATAGCGACG
CCTCGAAAAGATGTTGTATTAGAATTAGCTCCACGACTACAAGAAGTGTTTCCAGATATACCATTTGCGACATTATACGG
AGGCAGTAAAGAATATGAAAAAGAAGCGATGCTTATCGTAACTACAACTCATCAGTTGCTTCGCTATTATAGGGCGTTTG
ATGTCATGATTATAGATGAAATTGATGCTTTTCCGTATGTGATGGATCATATGTTACATGAGGCCGTAAGAAAAGCGGCG
AAGGAGGATGCTTCCTATATTTATTTAACAGCAACTCCAGAAGAGAAATGGAAACAGAGTGTGCAAAATGGTAAACAAAA
AGGTGTTATTATATCAGGACGTTATCATCGCCATCCATTACCGGTTCCTAAATTAAAATGGTGTGGAAATTGGAGAAAAC
TACTTCGACGTAAACAAATTCCTCAAGTTCTATTGGACTGGCTTCTTATATATCTACAAAAACATTATCCTATCTTTTTA
TTTGTTCCTCATATTTGTTATGTAGAGGAAGTAACGGCTGTGTTACAAAGATTACATCATAAAATTACTGGTGTTCATGC
AGAAGATCCAATGAGAAAAGAGAAAGTAGAGGCATTTCGTAAAGGGGATATACCATTACTCATAACTACAACTATATTGG
AGAGAGGGGTAACGGTCGCGAATTTACAAGTAGCTGTGCTAGGAGCAGAAGAGGATATTTTTTCTGAAAGTGCACTGGTT
CAGATAGCGGGCCGCGTTGGTAGAAGTTCTCACAATCCAAAGGGGGAAGTCATTTATTTTCATTATGGAAAAACGAAAGC
AATGACTGCTGCGAAAAAGCATATTCAATTTATGAATAAAAGGGCTAAACGAGAAGGGTTGATAGATTGA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (312-409)

• Type III restriction enzyme, res subunit (ResIII) (107-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.113	98.218	0.492
comFA	Latilactobacillus sakei subsp. sakei 23K	38.626	93.987	0.363