Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DD562_RS04210 Genome accession   NZ_CP029172
Coordinates   811729..812403 (+) Length   224 a.a.
NCBI ID   WP_001166506.1    Uniprot ID   -
Organism   Staphylococcus aureus strain PTDrAP2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 806729..817403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DD562_RS04180 (DD562_04180) - 806944..808011 (+) 1068 WP_000980142.1 membrane protein -
  DD562_RS04185 (DD562_04185) - 808162..809205 (+) 1044 WP_001030759.1 alpha/beta hydrolase -
  DD562_RS04195 (DD562_04195) - 809535..809963 (+) 429 WP_000198503.1 hypothetical protein -
  DD562_RS04200 (DD562_04200) - 810171..810677 (-) 507 WP_000940129.1 GNAT family N-acetyltransferase -
  DD562_RS04205 (DD562_04205) graX 810790..811713 (+) 924 WP_000802948.1 auxiliary protein GraX/ApsX -
  DD562_RS04210 (DD562_04210) braR 811729..812403 (+) 675 WP_001166506.1 response regulator transcription factor GraR/ApsR Regulator
  DD562_RS04215 (DD562_04215) graS 812396..813436 (+) 1041 WP_001061267.1 histidine kinase GraS/ApsS -
  DD562_RS04220 (DD562_04220) vraF 813583..814344 (+) 762 WP_109028205.1 ABC transporter ATP-binding protein VraF -
  DD562_RS04225 (DD562_04225) - 814334..816223 (+) 1890 WP_000009400.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26062.92 Da        Isoelectric Point: 4.4019

>NTDB_id=251903 DD562_RS04210 WP_001166506.1 811729..812403(+) (braR) [Staphylococcus aureus strain PTDrAP2]
MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKYDGFYWCRKMREVSNVPILFLSSR
DNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTAEEKRTLTWQDAVVDLSKDSIQKGEQTIFLSKTEMIIL
EILITKKNQIVSRDTIITALWDDEAFVSDNTLTVNVNRLRKKLSEIGMDSAIETKVGKGYMAHE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=251903 DD562_RS04210 WP_001166506.1 811729..812403(+) (braR) [Staphylococcus aureus strain PTDrAP2]
ATGCAAATACTACTAGTAGAAGATGACAATACTTTGTTTCAAGAATTGAAAAAAGAATTAGAACAATGGGATTTTAATGT
TGCTGGTATTGAAGATTTCGGCAAAGTAATGGATACATTTGAAAGTTTTAATCCTGAAATTGTTATATTGGATGTTCAAT
TACCTAAATATGATGGGTTTTATTGGTGCAGAAAAATGAGAGAAGTTTCCAACGTACCAATATTATTTTTATCATCTCGT
GATAATCCAATGGATCAAGTGATGAGTATGGAACTTGGCGCAGATGATTATATGCAAAAGCCTTTTTATACAAATGTATT
AATTGCTAAATTACAAGCGATTTATCGACGAGTGTATGAATTTACTGCTGAAGAAAAACGTACATTGACTTGGCAAGATG
CTGTCGTTGATCTATCAAAAGATAGTATACAAAAAGGTGAACAGACGATTTTTCTATCCAAAACAGAAATGATTATATTA
GAAATTCTTATTACTAAAAAAAATCAAATCGTTTCGAGAGATACAATTATTACTGCGCTATGGGATGATGAAGCATTTGT
CAGTGATAACACATTAACAGTTAATGTGAACCGATTACGTAAGAAACTATCTGAAATAGGGATGGACAGCGCAATTGAAA
CAAAAGTAGGAAAAGGATATATGGCACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-221)

Response regulator receiver domain (Response_reg)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.818

98.214

0.411