Detailed information NTG0251890

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: CG483_RS20720
• Genome accession: NZ_CP024098
• Coordinates: 3929982..3931328 (-)
• Length: 448 a.a.
• NCBI ID: WP_109090172.1
• Uniprot ID: -
• Organism: Bacillus cytotoxicus strain CH_38
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3924982..3936328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG483_RS20700 (CG483_020650)	secA	3925191..3927701 (-)	2511	WP_012096177.1	preprotein translocase subunit SecA	-
CG483_RS20705 (CG483_020655)	hpf	3928064..3928603 (-)	540	WP_012096178.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
CG483_RS20710 (CG483_020665)	-	3928958..3929155 (-)	198	WP_012096179.1	cold shock domain-containing protein	-
CG483_RS20715 (CG483_020670)	-	3929278..3929982 (-)	705	WP_012096180.1	ComF family protein	-
CG483_RS20720 (CG483_020675)	comFA	3929982..3931328 (-)	1347	WP_109090172.1	DEAD/DEAH box helicase	Machinery gene
CG483_RS20725 (CG483_020680)	-	3931456..3932685 (-)	1230	WP_012096182.1	C40 family peptidase	-
CG483_RS20730 (CG483_020685)	-	3932955..3933269 (-)	315	WP_012096183.1	winged helix-turn-helix transcriptional regulator	-
CG483_RS20735 (CG483_020690)	-	3933554..3934396 (-)	843	WP_094374349.1	DegV family protein	-
CG483_RS20740 (CG483_020695)	-	3934787..3935425 (+)	639	WP_012096185.1	YigZ family protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 51334.14 Da
• Isoelectric Point: 9.6726

>NTDB_id=251890 CG483_RS20720 WP_109090172.1 3929982..3931328(-) (comFA) [Bacillus cytotoxicus strain CH_38]
MQKGRQMLLHELSWSKEQLHDFISRGEIVLEKGIVRKSSNYICQRCGNQEKRLFASFLCKRCNQVCAYCRKCIMMGRVSE
CTMLVRSVCEGKQECFPHALQWKGVLSPGQNRAAKGVVEAIKQKESFFIWAVCGAGKTEMLFSGIDEALKNGKRVCIATP
RKDVVLELAPRLQEVFPDIPFATLYGGSKEYEKEAMLIVTTTHQLLRYYRAFDVMIIDEIDAFPYAMDHMLHEAVRKAAK
EDASYIYLTATPEEKWKQSVQNGKQKGVIISGRYHRHPLPVPKLKWCGNWRKLLRRKQIPQVLLDWLLIYLQKHYPIFLF
VPHICYVEEVTAVLQRLHHKIAGVHAEDPMRKEKVEAFRKGDIPLLITTTILERGVTVTNLQVAVLGAEEDIFSESALVQ
IAGRVGRSSHNPKGEVIYFHYGKTKAMTAAKKHIQFMNKRAKQEGLID

Nucleotide

• Length: 1347 bp

>NTDB_id=251890 CG483_RS20720 WP_109090172.1 3929982..3931328(-) (comFA) [Bacillus cytotoxicus strain CH_38]
ATACAAAAAGGAAGACAAATGTTATTGCATGAACTTTCATGGTCAAAAGAACAGTTGCACGATTTCATAAGTAGAGGGGA
GATTGTATTAGAAAAAGGGATTGTTCGAAAAAGTTCCAATTATATATGCCAACGTTGCGGGAATCAAGAGAAACGTCTAT
TTGCATCATTTTTATGCAAAAGGTGTAATCAAGTATGTGCGTATTGCCGGAAGTGTATTATGATGGGACGAGTAAGCGAA
TGTACGATGCTTGTTCGAAGTGTTTGCGAAGGGAAACAAGAATGTTTTCCTCATGCCTTGCAGTGGAAAGGAGTATTGTC
ACCGGGGCAAAATAGGGCTGCAAAAGGGGTAGTAGAAGCAATTAAACAGAAAGAGTCCTTTTTTATTTGGGCGGTATGTG
GTGCTGGAAAAACGGAGATGTTGTTTTCTGGCATAGATGAAGCGCTTAAAAACGGTAAGCGAGTTTGTATAGCGACGCCT
CGAAAAGATGTTGTATTAGAATTAGCTCCACGACTACAAGAAGTGTTTCCAGATATACCATTTGCGACATTATACGGAGG
CAGTAAAGAATATGAAAAAGAAGCGATGCTTATCGTAACTACAACTCATCAGTTGCTTCGCTATTATAGGGCGTTTGATG
TCATGATTATAGATGAAATTGATGCTTTTCCGTATGCGATGGATCATATGTTACATGAGGCCGTAAGAAAAGCGGCGAAG
GAGGATGCTTCCTATATTTATTTAACAGCAACTCCAGAAGAGAAATGGAAACAGAGTGTGCAAAATGGTAAACAAAAAGG
TGTTATTATATCAGGACGTTATCATCGCCATCCATTACCGGTTCCTAAATTAAAATGGTGTGGAAATTGGAGAAAACTAC
TTCGACGTAAACAAATTCCTCAAGTTCTATTGGACTGGCTTCTTATATATCTACAAAAACATTATCCTATCTTTTTATTT
GTTCCTCATATTTGTTATGTAGAGGAAGTAACGGCTGTGTTACAAAGATTACATCATAAAATTGCTGGTGTTCATGCAGA
AGATCCAATGAGAAAAGAGAAAGTAGAGGCATTTCGTAAAGGGGATATACCACTACTCATAACTACAACTATATTGGAGA
GAGGGGTAACGGTCACGAATTTACAAGTAGCTGTGCTAGGAGCAGAAGAGGATATTTTTTCTGAAAGTGCACTGGTTCAG
ATAGCGGGCCGCGTTGGTAGAAGTTCTCACAATCCAAAGGGGGAAGTCATTTATTTTCATTATGGAAAAACGAAAGCAAT
GACTGCTGCGAAAAAGCATATTCAATTTATGAATAAAAGGGCTAAACAAGAAGGGTTGATAGATTGA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (311-408)

• Type III restriction enzyme, res subunit (ResIII) (106-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.569	97.991	0.496