Detailed information NTG0251842

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: CG475_RS20960
• Genome accession: NZ_CP024096
• Coordinates: 3966953..3968299 (-)
• Length: 448 a.a.
• NCBI ID: WP_109090172.1
• Uniprot ID: -
• Organism: Bacillus cytotoxicus strain CH_39
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3961953..3973299

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CG475_RS20940 (CG475_020890)	secA	3962162..3964672 (-)	2511	WP_012096177.1	preprotein translocase subunit SecA	-
CG475_RS20945 (CG475_020895)	hpf	3965035..3965574 (-)	540	WP_012096178.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
CG475_RS20950 (CG475_020905)	-	3965929..3966126 (-)	198	WP_012096179.1	cold shock domain-containing protein	-
CG475_RS20955 (CG475_020910)	-	3966249..3966953 (-)	705	WP_012096180.1	ComF family protein	-
CG475_RS20960 (CG475_020915)	comFA	3966953..3968299 (-)	1347	WP_109090172.1	DEAD/DEAH box helicase	Machinery gene
CG475_RS20965 (CG475_020920)	-	3968428..3969657 (-)	1230	WP_012096182.1	C40 family peptidase	-
CG475_RS20970 (CG475_020925)	-	3969927..3970241 (-)	315	WP_012096183.1	winged helix-turn-helix transcriptional regulator	-
CG475_RS20975 (CG475_020930)	-	3970526..3971368 (-)	843	WP_094374349.1	DegV family protein	-
CG475_RS20980 (CG475_020935)	-	3971759..3972397 (+)	639	WP_012096185.1	YigZ family protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 51334.14 Da
• Isoelectric Point: 9.6726

>NTDB_id=251842 CG475_RS20960 WP_109090172.1 3966953..3968299(-) (comFA) [Bacillus cytotoxicus strain CH_39]
MQKGRQMLLHELSWSKEQLHDFISRGEIVLEKGIVRKSSNYICQRCGNQEKRLFASFLCKRCNQVCAYCRKCIMMGRVSE
CTMLVRSVCEGKQECFPHALQWKGVLSPGQNRAAKGVVEAIKQKESFFIWAVCGAGKTEMLFSGIDEALKNGKRVCIATP
RKDVVLELAPRLQEVFPDIPFATLYGGSKEYEKEAMLIVTTTHQLLRYYRAFDVMIIDEIDAFPYAMDHMLHEAVRKAAK
EDASYIYLTATPEEKWKQSVQNGKQKGVIISGRYHRHPLPVPKLKWCGNWRKLLRRKQIPQVLLDWLLIYLQKHYPIFLF
VPHICYVEEVTAVLQRLHHKIAGVHAEDPMRKEKVEAFRKGDIPLLITTTILERGVTVTNLQVAVLGAEEDIFSESALVQ
IAGRVGRSSHNPKGEVIYFHYGKTKAMTAAKKHIQFMNKRAKQEGLID

Nucleotide

• Length: 1347 bp

>NTDB_id=251842 CG475_RS20960 WP_109090172.1 3966953..3968299(-) (comFA) [Bacillus cytotoxicus strain CH_39]
ATACAAAAAGGAAGACAAATGTTATTGCATGAACTTTCATGGTCAAAAGAACAGTTGCACGATTTCATAAGTAGAGGGGA
GATTGTATTAGAAAAAGGGATTGTTCGAAAAAGTTCCAATTATATATGCCAACGTTGCGGGAATCAAGAGAAACGTCTAT
TTGCATCATTTTTATGCAAAAGGTGTAATCAAGTATGTGCGTATTGCCGGAAGTGTATTATGATGGGACGAGTAAGCGAA
TGTACGATGCTTGTTCGAAGTGTTTGCGAAGGGAAACAAGAATGTTTTCCTCATGCCTTGCAGTGGAAAGGAGTATTGTC
ACCGGGGCAAAATAGGGCTGCAAAAGGGGTAGTAGAAGCAATTAAACAGAAAGAGTCCTTTTTTATTTGGGCGGTATGTG
GTGCTGGAAAAACGGAGATGTTGTTTTCTGGCATAGATGAAGCGCTTAAAAACGGTAAGCGAGTTTGTATAGCGACGCCT
CGAAAAGATGTTGTATTAGAATTAGCTCCACGACTACAAGAAGTGTTTCCAGATATACCATTTGCGACATTATACGGAGG
CAGTAAAGAATATGAAAAAGAAGCGATGCTTATCGTAACTACAACTCATCAGTTGCTTCGCTATTATAGGGCGTTTGATG
TCATGATTATAGATGAAATTGATGCTTTTCCGTATGCGATGGATCATATGTTACATGAGGCCGTAAGAAAAGCGGCGAAG
GAGGATGCTTCCTATATTTATTTAACAGCAACTCCAGAAGAGAAATGGAAACAGAGTGTGCAAAATGGTAAACAAAAAGG
TGTTATTATATCAGGACGTTATCATCGCCATCCATTACCGGTTCCTAAATTAAAATGGTGTGGAAATTGGAGAAAACTAC
TTCGACGTAAACAAATTCCTCAAGTTCTATTGGACTGGCTTCTTATATATCTACAAAAACATTATCCTATCTTTTTATTT
GTTCCTCATATTTGTTATGTAGAGGAAGTAACGGCTGTGTTACAAAGATTACATCATAAAATTGCTGGTGTTCATGCAGA
AGATCCAATGAGAAAAGAGAAAGTAGAGGCATTTCGTAAAGGGGATATACCACTACTCATAACTACAACTATATTGGAGA
GAGGGGTAACGGTCACGAATTTACAAGTAGCTGTGCTAGGAGCAGAAGAGGATATTTTTTCTGAAAGTGCACTGGTTCAG
ATAGCGGGCCGCGTTGGTAGAAGTTCTCACAATCCAAAGGGGGAAGTCATTTATTTTCATTATGGAAAAACGAAAGCAAT
GACTGCTGCGAAAAAGCATATTCAATTTATGAATAAAAGGGCTAAACAAGAAGGGTTGATAGATTGA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (311-408)

• Type III restriction enzyme, res subunit (ResIII) (106-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	50.569	97.991	0.496