Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   SAB_RS03640 Genome accession   NC_007622
Coordinates   735592..737373 (+) Length   593 a.a.
NCBI ID   WP_000983684.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 730592..742373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS03625 (SAB0668) ltaS 731486..733426 (+) 1941 WP_000098286.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  SAB_RS03635 (SAB0669) - 733697..735580 (+) 1884 WP_000525107.1 ABC-F family ATP-binding cassette domain-containing protein -
  SAB_RS03640 (SAB0670) recQ 735592..737373 (+) 1782 WP_000983684.1 DNA helicase RecQ Machinery gene
  SAB_RS03645 (SAB0671) - 737595..738572 (+) 978 WP_000589261.1 ABC transporter ATP-binding protein -
  SAB_RS03650 (SAB0672) - 738565..740079 (+) 1515 WP_000180991.1 ABC transporter permease/substrate-binding protein -
  SAB_RS03655 (SAB0673) hisC 740318..741376 (+) 1059 WP_000663036.1 histidinol-phosphate transaminase -
  SAB_RS03660 (SAB0674) - 741534..742076 (+) 543 WP_000197266.1 5' nucleotidase, NT5C type -

Sequence

Protein


Download         Length: 593 a.a.        Molecular weight: 68069.92 Da        Isoelectric Point: 6.9431

>NTDB_id=25183 SAB_RS03640 WP_000983684.1 735592..737373(+) (recQ) [Staphylococcus aureus RF122]
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVGQLKAMGIQ
AAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFT
LPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVE
ELQEALESQKIESDIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRD
GLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDK
SYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEI
LMCDTSIKKLLSNEVEVFTTPFRQKATGKVFINTVEGGDRVLFSQLVEVRKRLSDKLTIAPVSIFSDYTLEEFAKRKPAS
KQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV

Nucleotide


Download         Length: 1782 bp        

>NTDB_id=25183 SAB_RS03640 WP_000983684.1 735592..737373(+) (recQ) [Staphylococcus aureus RF122]
ATGATGCAACAAACATTATCGCATTACTTTGGGTATGAAACGTTTCGACCAGGACAAGAAGAAATTATTAGCAAAGTATT
AGACCATCGTAATGTGCTTGGTGTCTTACCAACTGGTGGAGGTAAGTCTATATGCTATCAAGTACCAGGTTTATTGTTAG
GTGGTACAACAATTGTAATAAGTCCACTTATATCATTAATGAAAGATCAAGTGGGTCAGTTAAAAGCGATGGGAATTCAG
GCTGCTTTTTTAAATAGTAGTTTGACTCAAAAAGAGCAACAACGTATTGAAAAAGCATTATCAAATGGAGAAATTCAATT
TTTGTATGTTGCACCAGAACGATTTGAAAACCGATATTTTTTAAATATGCTTCAGCGTATAAAGATTCACTTAGTCGCGT
TTGATGAAGCGCATTGTATATCTAAATGGGGGCATGATTTCAGACCGAGTTATCAAAACGTCATTTCTAAAGTATTTACG
TTACCTCAAGATTTTACAATAATAGCGTTGACAGCAACTGCCACGGTTGAAGTACAGCAAGATATTAGAGAAAAGTTAAA
TATCGCTCAAACTGATCAAATTAAAACGAGTACTAAGCGTAGAAACTTAATTTTTAAAGTAAATCCTACTTATCAACGTC
AAAAATTTATATTGGATTATATTAAAACACACGATGAAGATGCAGGTATTATTTATTGTTCTACACGTAAGCAAGTTGAA
GAGCTTCAAGAAGCCTTAGAAAGCCAGAAAATTGAAAGTGATATATATCATGCAGGTTTGAGCAATAAAGAAAGAGAAGA
AGCGCAGAATGATTTCTTATTTGATCGTGTTAAAGTAGTCGTTGCTACAAATGCTTTTGGTATGGGTATTGATAAATCCA
ATGTACGTTTTGTTATTCATTATAATATGCCTGGAGATTTAGAATCTTATTATCAAGAAGCGGGTCGTGCAGGTCGTGAT
GGGTTGAAAAGTGAATGTATTTTGTTATTTAGTGAACGCGATATCAATTTACACGAGTATTTTATAACAGTCTCTCAAGC
TGATGATGACTATAAAGATAAAATGGGTGAAAAGTTAACTAAAATGATTCAATATACAAAAACAAAAAAATGTTTAGAAG
CAACAATTGTCCATTATTTTGAACCGAATGAAAAATTAGAAGAATGTGAACAATGTAGTAATTGTGTTCAACAAGATAAA
TCATATAATATGACACAAGAAGCTAAGATGATTATTAGTTGCATCGCTCGTATGAAACAACAAGAGAGTTATAGTGTTAT
CATTCAAGTGCTAAGAGGAGAGTCAACAGATTATATTAAGTATAAAGGTTATGATCAAATTTCAACCCATGGTTTAATGA
AAGGTTACACAACATCAGAATTAAGTCACTTAATAGATGAATTAAGATTCAAAGGGTTCTTAAATGAAAATGATGAAATA
TTAATGTGTGATACTTCAATTAAAAAATTACTCAGTAATGAAGTAGAAGTATTCACAACACCATTTAGGCAAAAAGCGAC
TGGAAAAGTATTTATTAATACGGTTGAAGGGGGTGACCGAGTATTATTCAGTCAGTTGGTAGAAGTTCGTAAAAGGTTAA
GTGACAAATTAACGATAGCACCTGTAAGTATATTTTCTGATTACACATTGGAGGAATTTGCTAAACGTAAGCCTGCTTCG
AAACAAGATATGATTAATATTGATGGCGTAGGTAGTTACAAATTAAAACATTATTGTCCAGCATTTTTAGAAACGATTCA
AAATTATAAAGCCAAAGTATAG

Domains

Predicted by InterProScan.

RQC domain (RQC)

(400-500)

HRDC domain (HRDC)

(521-586)

Helicase conserved C-terminal domain (Helicase_C)

(217-320)

RecQ zinc-binding (RecQ_Zn_bind)

(333-395)

DEAD/DEAH box helicase (DEAD)

(17-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

42.132

99.663

0.42

Multiple sequence alignment