Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   CG475_RS05560 Genome accession   NZ_CP024096
Coordinates   1085294..1087120 (+) Length   608 a.a.
NCBI ID   WP_011983996.1    Uniprot ID   -
Organism   Bacillus cytotoxicus strain CH_39     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1080294..1092120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CG475_RS05540 (CG475_005550) - 1080506..1081180 (-) 675 WP_011983992.1 TerC family protein -
  CG475_RS05545 (CG475_005555) mecA 1081588..1082262 (+) 675 WP_011983993.1 adaptor protein MecA Regulator
  CG475_RS05550 (CG475_005560) cls 1082363..1083907 (+) 1545 WP_087094616.1 cardiolipin synthase -
  CG475_RS05555 (CG475_005565) - 1083999..1085201 (+) 1203 WP_109090165.1 competence protein CoiA -
  CG475_RS05560 (CG475_005570) pepF 1085294..1087120 (+) 1827 WP_011983996.1 oligoendopeptidase F Regulator
  CG475_RS05565 (CG475_005580) - 1087569..1088462 (-) 894 WP_011983997.1 ClpXP adapter SpxH family protein -
  CG475_RS05570 (CG475_005585) - 1088462..1088860 (-) 399 WP_011983998.1 globin -
  CG475_RS05575 (CG475_005590) - 1089098..1089676 (-) 579 WP_011983999.1 CYTH domain-containing protein -
  CG475_RS05580 (CG475_005595) - 1089821..1090192 (+) 372 WP_011984000.1 hypothetical protein -
  CG475_RS05585 (CG475_005600) - 1090223..1090861 (+) 639 WP_011984001.1 GTP pyrophosphokinase -
  CG475_RS05590 (CG475_005605) - 1090880..1091677 (+) 798 WP_011984002.1 NAD kinase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70608.28 Da        Isoelectric Point: 5.0992

>NTDB_id=251817 CG475_RS05560 WP_011983996.1 1085294..1087120(+) (pepF) [Bacillus cytotoxicus strain CH_39]
MSEQNAGKVLPDRSEIEEKNTWRLEDIFQTDEAWEKEFQAIKELLPKLNEFKGKLGDSAESLLAALQYEDEISMRLGKLY
TYAHMRYDQDTTNSTYQALNDRAMNLYSQVSSSTAYIVPEILKISQELLQSFLQENKELRVYEHALEEITRQRPHVLSEA
EESLLAEAAEVMSSSSNTFGMLNNADLKFPSIKDENGEEVEVTHGRYIQFLESDDRRVRHDAFHAVYETYGKFKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNHIPETVYDQLIETVHNHLHLLHRYIDIRKRALKLDELHMYDLYTPLVPEVKM
NVKYEEAQEILLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHQKVQ
EGHAVTPDMLTEIYYDLNKTYFGDAVVIDKEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGKPAVERYINEF
LKAGSSDYPIEVLKKAGVDMTSPEPVKEALQVFEEKLNELEALLFEKK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=251817 CG475_RS05560 WP_011983996.1 1085294..1087120(+) (pepF) [Bacillus cytotoxicus strain CH_39]
ATGTCGGAACAAAATGCAGGAAAAGTATTACCAGATCGCAGTGAAATTGAAGAAAAAAATACGTGGCGTTTAGAAGATAT
CTTTCAAACGGATGAAGCGTGGGAAAAAGAATTTCAAGCCATAAAAGAGCTATTACCGAAGTTAAATGAGTTTAAGGGTA
AGCTTGGTGATTCTGCCGAGTCCTTATTAGCAGCATTACAATATGAAGATGAAATTTCTATGCGGTTAGGAAAATTATAT
ACATATGCACATATGCGTTACGATCAAGATACAACCAATTCTACTTATCAAGCACTCAACGATCGTGCGATGAACTTATA
CTCACAAGTTTCCAGTAGCACAGCATACATCGTGCCTGAAATTTTAAAGATTTCACAAGAACTGTTACAGTCGTTCTTAC
AGGAAAATAAAGAATTACGCGTGTATGAACATGCATTAGAAGAGATTACACGTCAGCGTCCTCACGTATTATCTGAGGCT
GAAGAATCATTGCTGGCAGAAGCGGCTGAAGTCATGAGTTCTTCAAGTAATACATTTGGGATGTTGAATAATGCGGATTT
AAAATTTCCATCGATTAAAGATGAGAATGGAGAGGAAGTAGAAGTTACGCATGGTCGCTATATTCAATTTTTAGAGAGTG
ATGATCGTCGCGTGCGCCATGATGCTTTTCATGCTGTGTATGAAACGTACGGGAAATTTAAAAATACATTTGCGAGTACT
TTAAGTGGTGCGGTAAAACGCAATAACTTCAATGCTCGCGTACGCAAATATGATTCTGCACGTCAAGCAGCATTAAGTAA
CAATCATATTCCGGAAACGGTATATGATCAACTTATCGAAACCGTACACAATCATTTACATTTATTACACCGTTACATTG
ATATTCGTAAACGTGCATTAAAACTCGATGAATTACATATGTACGACTTATACACTCCTCTTGTACCAGAAGTGAAAATG
AATGTGAAATATGAAGAAGCACAAGAGATTTTATTAAAATCGTTACATGTTCTTGGTGACGAATATGTTGACATTTTAAA
AGAAGCATATGAAAATCGCTGGGTAGATGTATACGAAAATAAAGGGAAGCGTAGCGGAGCTTATTCATCTGGAGCATATG
GAACAAACCCATATATCTTAATGAACTGGCATGATAATGTAAATAACTTATTTACATTAGCGCATGAATTTGGTCATTCT
GTGCATAGTTACTATACAAGAAAAACACAACCGCACGTGTATGGAGATTATTCCATCTTTGTGGCTGAAGTTGCTTCTAC
ATGTAATGAAGCGCTTCTTAATGACTATCTGTTAAAAACAACAGAAGATAAAAAAGAGCGTTTATATTTATTAAATCATT
ATTTAGAAGGATTCCGCGGAACAGTATTCCGTCAAACGATGTTTGCGGAATTTGAACATATCATCCATCAAAAGGTACAA
GAAGGTCATGCAGTAACACCAGATATGTTAACTGAAATTTACTATGACTTAAATAAAACATACTTTGGAGATGCCGTAGT
AATTGATAAAGAAATTGGATTAGAATGGTCCCGTATCCCGCATTTCTATTACAATTACTACGTATACCAATATGCAACAG
GATTTAGTGCAGCGACTGCTTTATCGAAACAGATTTTAGAAGAAGGAAAGCCAGCAGTAGAGCGCTATATTAATGAATTC
TTAAAAGCTGGAAGCTCCGATTATCCAATCGAGGTATTGAAAAAAGCAGGGGTAGATATGACATCACCAGAGCCTGTTAA
AGAAGCATTACAAGTATTTGAAGAGAAGTTAAATGAGTTAGAAGCTTTATTATTTGAAAAGAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.084

97.533

0.488

Multiple sequence alignment