Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DDV95_RS22575 Genome accession   NZ_CP029164
Coordinates   4361537..4362142 (-) Length   201 a.a.
NCBI ID   WP_001195017.1    Uniprot ID   -
Organism   Escherichia coli strain 104     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4356537..4367142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV95_RS22550 (DDV95_22550) aes 4356678..4357637 (+) 960 WP_000801797.1 acetyl esterase -
  DDV95_RS22555 (DDV95_22555) hemH 4357634..4358596 (-) 963 WP_001250105.1 ferrochelatase -
  DDV95_RS22560 (DDV95_22560) adk 4358728..4359372 (-) 645 WP_001220233.1 adenylate kinase -
  DDV95_RS22570 (DDV95_22570) htpG 4359553..4361427 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  DDV95_RS22575 (DDV95_22575) recR 4361537..4362142 (-) 606 WP_001195017.1 recombination mediator RecR Machinery gene
  DDV95_RS22580 (DDV95_22580) ybaB 4362142..4362471 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  DDV95_RS22585 (DDV95_22585) dnaX 4362524..4364455 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  DDV95_RS22590 (DDV95_22590) apt 4364584..4365135 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  DDV95_RS22600 (DDV95_22600) ybaN 4365288..4365665 (-) 378 WP_001188905.1 DUF454 family protein -
  DDV95_RS22605 (DDV95_22605) priC 4365735..4366262 (+) 528 WP_000844858.1 primosomal replication protein N'' -
  DDV95_RS22610 (DDV95_22610) rsmS 4366276..4366437 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  DDV95_RS26505 - 4366490..4366588 (-) 99 Protein_4156 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21972.01 Da        Isoelectric Point: 5.0751

>NTDB_id=251795 DDV95_RS22575 WP_001195017.1 4361537..4362142(-) (recR) [Escherichia coli strain 104]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEHEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=251795 DDV95_RS22575 WP_001195017.1 4361537..4362142(-) (recR) [Escherichia coli strain 104]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACACGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438