Detailed information NTG0251743

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC73_RS11840
• Genome accession: NZ_CP024082
• Coordinates: 2540671..2541678 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain FORC_073
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2535671..2546678

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC73_RS11830 (FORC73_2238)	cysM	2536831..2537718 (+)	888	WP_001279361.1	cysteine synthase CysM	-
FORC73_RS11835 (FORC73_2239)	mutS	2537986..2540574 (+)	2589	WP_032477068.1	DNA mismatch repair protein MutS	-
FORC73_RS11840 (FORC73_2240)	rpoS	2540671..2541678 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
FORC73_RS11845 (FORC73_2241)	-	2541752..2542687 (-)	936	WP_119783325.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC73_RS11850 (FORC73_2242)	-	2542687..2543313 (-)	627	WP_001963752.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC73_RS11855 (FORC73_2243)	surE	2543306..2544058 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
FORC73_RS11860 (FORC73_2244)	truD	2544060..2545145 (-)	1086	WP_044126956.1	tRNA pseudouridine(13) synthase TruD	-
FORC73_RS11865 (FORC73_2245)	ispF	2545175..2545651 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC73_RS11870 (FORC73_2246)	ispD	2545648..2546346 (-)	699	WP_001061962.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC73_RS11875 (FORC73_2247)	ftsB	2546343..2546627 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=251743 FORC73_RS11840 WP_000116735.1 2540671..2541678(-) (rpoS) [Vibrio cholerae strain FORC_073]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=251743 FORC73_RS11840 WP_000116735.1 2540671..2541678(-) (rpoS) [Vibrio cholerae strain FORC_073]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCTATCCATGTCGTCAAAGAGCTGAATATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCT
GACTCTCACAATGCTGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTTGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997