Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FORC73_RS11700 Genome accession   NZ_CP024082
Coordinates   2514306..2514824 (-) Length   172 a.a.
NCBI ID   WP_119783322.1    Uniprot ID   -
Organism   Vibrio cholerae strain FORC_073     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2509306..2519824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC73_RS11675 (FORC73_2215) rimM 2509415..2509969 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  FORC73_RS11680 (FORC73_2216) rpsP 2509997..2510245 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  FORC73_RS11685 (FORC73_2217) ffh 2510481..2511866 (-) 1386 WP_032470944.1 signal recognition particle protein -
  FORC73_RS11690 (FORC73_2218) - 2512079..2512873 (+) 795 WP_119783320.1 inner membrane protein YpjD -
  FORC73_RS11695 (FORC73_2219) - 2512956..2514236 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  FORC73_RS11700 (FORC73_2220) luxS 2514306..2514824 (-) 519 WP_119783322.1 S-ribosylhomocysteine lyase Regulator
  FORC73_RS11705 (FORC73_2221) gshA 2514873..2516447 (-) 1575 WP_000032616.1 glutamate--cysteine ligase -
  FORC73_RS11710 (FORC73_2222) - 2516559..2519414 (-) 2856 WP_032470942.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=251740 FORC73_RS11700 WP_119783322.1 2514306..2514824(-) (luxS) [Vibrio cholerae strain FORC_073]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKVIAKNVIAAGISANRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=251740 FORC73_RS11700 WP_119783322.1 2514306..2514824(-) (luxS) [Vibrio cholerae strain FORC_073]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTGGAAGAAGCCAAAGTGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGCTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

98.837

100

0.988

Multiple sequence alignment