Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC73_RS08295 Genome accession   NZ_CP024082
Coordinates   1787597..1789021 (+) Length   474 a.a.
NCBI ID   WP_119783211.1    Uniprot ID   -
Organism   Vibrio cholerae strain FORC_073     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1782597..1794021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC73_RS08275 (FORC73_1563) - 1783041..1783826 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  FORC73_RS08280 (FORC73_1564) cobT 1783826..1784851 (-) 1026 WP_000887076.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC73_RS08285 (FORC73_1565) msrB 1785276..1785734 (-) 459 WP_032470831.1 peptide-methionine (R)-S-oxide reductase MsrB -
  FORC73_RS08290 (FORC73_1566) - 1786080..1787453 (+) 1374 WP_000117953.1 L-cystine transporter -
  FORC73_RS08295 (FORC73_1567) sbcB 1787597..1789021 (+) 1425 WP_119783211.1 exodeoxyribonuclease I Machinery gene
  FORC73_RS08300 (FORC73_1568) - 1789053..1789427 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  FORC73_RS08305 (FORC73_1569) - 1789418..1790092 (+) 675 WP_000266245.1 LrgB family protein -
  FORC73_RS08310 (FORC73_1570) cdd 1790262..1791149 (+) 888 WP_001245905.1 cytidine deaminase -
  FORC73_RS08315 (FORC73_1571) - 1791308..1792183 (+) 876 WP_000462870.1 AEC family transporter -
  FORC73_RS08320 (FORC73_1572) purT 1792337..1793512 (+) 1176 WP_000468083.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54510.98 Da        Isoelectric Point: 6.2565

>NTDB_id=251732 FORC73_RS08295 WP_119783211.1 1787597..1789021(+) (sbcB) [Vibrio cholerae strain FORC_073]
MQQKHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAQNAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=251732 FORC73_RS08295 WP_119783211.1 1787597..1789021(+) (sbcB) [Vibrio cholerae strain FORC_073]
ATGCAGCAAAAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCATCAGCCTAGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCCCAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.945

100

0.989

Multiple sequence alignment