Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SAB_RS00120 Genome accession   NC_007622
Coordinates   30204..31004 (+) Length   266 a.a.
NCBI ID   WP_011382148.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 25204..36004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS00105 (SAB0019) walK 25873..27699 (+) 1827 WP_000871607.1 cell wall metabolism sensor histidine kinase WalK -
  SAB_RS00110 (SAB0020) yycH 27692..29026 (+) 1335 WP_001060134.1 two-component system activity regulator YycH -
  SAB_RS00115 (SAB0021) yycI 29027..29815 (+) 789 WP_001104167.1 two-component system regulatory protein YycI -
  SAB_RS00120 (SAB0022) vicX 30204..31004 (+) 801 WP_011382148.1 MBL fold metallo-hydrolase Regulator
  SAB_RS00125 (SAB0023) adsA 31231..33549 (+) 2319 WP_000645747.1 LPXTG-anchored adenosine synthase AdsA -
  SAB_RS00130 (SAB0024) rlmH 33918..34397 (+) 480 WP_000704775.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SAB_RS00135 (SAB0025) - 34735..35634 (+) 900 WP_000365297.1 hypothetical protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30312.53 Da        Isoelectric Point: 6.4996

>NTDB_id=25172 SAB_RS00120 WP_011382148.1 30204..31004(+) (vicX) [Staphylococcus aureus RF122]
MSRLIRMSVLASGSTGNATFVENEKGSLLVDVGLTGKKMEELFSQIDRNIQNLNGILVTHEHIDHIKGLGVLARKYQLPI
YANEKTWQAIEKKDSRIPMDQKFIFNPYETKSIAGFDVESFNVSHDAIDPQFYIFHNNYKKFTILTDTGYVSDRMKGMIR
GSDAFIFESNHDVDMLRMCRYPWKTKQRILGDMGHVSNEDAGHAMTDVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLN
EHDIDTEKEVLLCDTDKAIPTPIYTI

Nucleotide


Download         Length: 801 bp        

>NTDB_id=25172 SAB_RS00120 WP_011382148.1 30204..31004(+) (vicX) [Staphylococcus aureus RF122]
ATGAGCCGCTTGATACGCATGAGTGTATTAGCAAGTGGTAGTACAGGTAACGCCACTTTTGTAGAAAATGAAAAAGGTAG
TCTATTAGTAGATGTTGGTTTGACTGGCAAGAAAATGGAAGAATTGTTTAGTCAAATTGACCGTAATATTCAAAATTTAA
ATGGTATTTTAGTAACCCATGAACATATTGATCATATTAAAGGATTAGGTGTTTTGGCGCGTAAATATCAATTGCCAATT
TATGCGAATGAAAAGACTTGGCAGGCAATTGAAAAGAAAGATAGTCGCATCCCTATGGATCAGAAATTCATTTTTAATCC
TTATGAAACGAAATCTATTGCAGGTTTCGATGTTGAATCGTTTAACGTGTCACATGATGCGATAGATCCGCAATTCTATA
TTTTCCATAATAACTATAAGAAGTTTACGATTTTAACAGATACGGGTTACGTGTCTGATCGTATGAAAGGTATGATACGT
GGCAGCGATGCGTTTATTTTTGAAAGTAATCATGACGTCGATATGTTGAGAATGTGTCGTTATCCATGGAAGACGAAACA
ACGTATTTTAGGCGATATGGGTCATGTATCTAATGAGGATGCGGGTCATGCGATGACAGACGTGATTACAGGTAACACGA
AACGTATTTACTTATCGCATTTATCACAAGATAATAATATGAAAGATTTGGCGCGTATGAGTGTTGGCCAAGTATTGAAC
GAACACGATATTGATACGGAAAAAGAAGTATTGCTATGTGATACGGATAAAGCTATTCCAACGCCAATATATACAATATA
A

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(14-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

48.638

96.617

0.47

Multiple sequence alignment