Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   C3363_RS03600 Genome accession   NZ_CP029150
Coordinates   720617..722167 (+) Length   516 a.a.
NCBI ID   WP_016528227.1    Uniprot ID   -
Organism   Glaesserella parasuis strain GZ20170512     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 715617..727167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3363_RS03575 (C3363_03590) dnaX 716058..718076 (+) 2019 WP_159179860.1 DNA polymerase III subunit gamma/tau -
  C3363_RS03580 (C3363_03595) - 718082..718978 (+) 897 WP_005712691.1 ABC transporter ATP-binding protein -
  C3363_RS03585 (C3363_03600) - 719000..719755 (+) 756 WP_159179861.1 ABC transporter permease -
  C3363_RS03590 (C3363_03605) - 719873..720127 (+) 255 WP_021118772.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  C3363_RS03595 (C3363_03610) - 720124..720408 (+) 285 WP_012621505.1 type II toxin-antitoxin system RelE family toxin -
  C3363_RS03600 (C3363_03615) sbcB 720617..722167 (+) 1551 WP_016528227.1 exodeoxyribonuclease I Machinery gene
  C3363_RS03605 (C3363_03620) - 722250..723209 (+) 960 WP_159179862.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  C3363_RS03610 (C3363_03625) - 723358..724179 (+) 822 WP_005712684.1 PHP domain-containing protein -
  C3363_RS03615 (C3363_03630) ilvN 724286..724777 (-) 492 WP_005712683.1 acetolactate synthase small subunit -
  C3363_RS03620 (C3363_03635) - 724770..726491 (-) 1722 WP_005712682.1 acetolactate synthase 3 large subunit -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58845.02 Da        Isoelectric Point: 5.5297

>NTDB_id=251689 C3363_RS03600 WP_016528227.1 720617..722167(+) (sbcB) [Glaesserella parasuis strain GZ20170512]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHAEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKAELEAQGLYTVPLKLVHINKCPILAPAKTLLPENATRL
GIDRLACLENLKRLKSQKNLVREKVLDIFSEERNYPTSNNIETTLYDGFFEPADKNNMAILRSLKPEELAHHGLKFSDPR
IEPLLFHYRARHYAETLTRAEQVRWQKYCYQQLEAKAEAFEQALDLLSAQYHDNPDKIKLLTDLTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=251689 C3363_RS03600 WP_016528227.1 720617..722167(+) (sbcB) [Glaesserella parasuis strain GZ20170512]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTTGC
AGGGATCCGCACCGATAGCGATTTCAACATTATCGGTGAACCCGTGATGTTCTACTGCCAACAAACAGAAGATTATTTGC
CTTCACCAGAAGCTGTGATGGTAACAGGGATTACACCACAGCTTTGTAATCAACAAGGGCTACCTGAACCTGAATTTGCC
GCGCGTATTCACGCCGAATTTAGCCAACCTAACACCTGCGTGATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACCATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTGCCATTGGCTTGGCACCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGCCTTTATACCAAAAAAGCAGAATTAGAAGCTCAAGGGCTTTATACTGTTC
CACTAAAACTTGTGCATATTAATAAATGCCCGATTTTAGCTCCAGCCAAAACGTTACTGCCTGAAAATGCAACACGTTTA
GGCATTGATCGTCTAGCCTGTTTAGAAAATTTAAAACGGCTAAAATCACAAAAAAACCTTGTGCGAGAAAAGGTTCTCGA
TATTTTTTCTGAAGAAAGAAACTATCCAACGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCAATCTTACGAAGCCTAAAACCTGAAGAGCTTGCACATCACGGTTTGAAATTTAGCGATCCTAGA
ATTGAGCCTCTGCTTTTCCATTATCGAGCAAGACACTACGCAGAAACCTTAACACGGGCAGAACAAGTACGTTGGCAAAA
GTATTGCTATCAACAACTTGAAGCAAAAGCAGAGGCCTTTGAACAAGCACTTGATCTGTTATCGGCTCAATATCACGATA
ATCCTGACAAGATAAAATTATTGACGGATCTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAATCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(8-186)

Exonuclease C-terminal (ExoI_SH3)

(207-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.503

90.891

0.514

Multiple sequence alignment