Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   SAB_RS10390 Genome accession   NC_007622
Coordinates   2047633..2048349 (+) Length   238 a.a.
NCBI ID   WP_000688496.1    Uniprot ID   -
Organism   Staphylococcus aureus RF122     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2042633..2053349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAB_RS10360 (SAB1917) - 2042835..2043461 (+) 627 WP_000522387.1 nitroreductase family protein -
  SAB_RS10365 (SAB1919) - 2043839..2044624 (+) 786 WP_000867955.1 carbon-nitrogen family hydrolase -
  SAB_RS10370 hld 2045221..2045301 (-) 81 WP_000046022.1 delta-hemolysin -
  SAB_RS10375 (SAB1920) - 2045592..2046155 (+) 564 WP_001105699.1 accessory gene regulator AgrB -
  SAB_RS10380 (SAB1921) - 2046158..2046301 (+) 144 WP_001094921.1 cyclic lactone autoinducer peptide AgrD -
  SAB_RS10385 (SAB1922) - 2046331..2047614 (+) 1284 WP_011382329.1 quorum-sensing sensor histidine kinase AgrC -
  SAB_RS10390 (SAB1923) agrA 2047633..2048349 (+) 717 WP_000688496.1 quorum-sensing response regulator AgrA Regulator
  SAB_RS10395 - 2048421..2048528 (+) 108 WP_042852791.1 hypothetical protein -
  SAB_RS10400 (SAB1924c) - 2048716..2049675 (-) 960 WP_001253290.1 carbohydrate kinase family protein -
  SAB_RS10405 (SAB1925c) - 2049672..2051156 (-) 1485 WP_000141425.1 sucrose-6-phosphate hydrolase -
  SAB_RS10410 (SAB1926c) - 2051305..2052255 (-) 951 WP_000790315.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27924.95 Da        Isoelectric Point: 6.1602

>NTDB_id=25166 SAB_RS10390 WP_000688496.1 2047633..2048349(+) (agrA) [Staphylococcus aureus RF122]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKERCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=25166 SAB_RS10390 WP_000688496.1 2047633..2048349(+) (agrA) [Staphylococcus aureus RF122]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGATCCA
GTTGGTAACATTATATTTGTTACGAGTCACAGTGAACTTACCTATTTAACGTTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAACATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACGCTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.58

100

0.996

Multiple sequence alignment