Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | BXP05_RS07560 | Genome accession | NZ_CP024077 |
| Coordinates | 1551628..1552764 (-) | Length | 378 a.a. |
| NCBI ID | WP_001045869.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 7.13_R3a | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1546628..1557764
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BXP05_RS07540 (BXP05_07535) | hypE | 1546743..1547741 (+) | 999 | WP_000378855.1 | hydrogenase expression/formation protein HypE | - |
| BXP05_RS07545 (BXP05_07540) | - | 1548048..1548980 (-) | 933 | WP_001006014.1 | GDP-L-fucose synthase family protein | - |
| BXP05_RS07550 (BXP05_07545) | gmd | 1548973..1550118 (-) | 1146 | WP_000659801.1 | GDP-mannose 4,6-dehydratase | - |
| BXP05_RS07555 (BXP05_07550) | - | 1550146..1551558 (-) | 1413 | WP_001861341.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| BXP05_RS07560 (BXP05_07555) | comB10 | 1551628..1552764 (-) | 1137 | WP_001045869.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| BXP05_RS07565 (BXP05_07560) | comB9 | 1552757..1553740 (-) | 984 | WP_001861340.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| BXP05_RS07570 (BXP05_07565) | comB8 | 1553740..1554483 (-) | 744 | WP_000660520.1 | type IV secretion system protein | Machinery gene |
| BXP05_RS07575 (BXP05_07570) | comB7 | 1554480..1554593 (-) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| BXP05_RS07580 (BXP05_07575) | comB6 | 1554609..1555664 (-) | 1056 | WP_000786677.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| BXP05_RS07585 (BXP05_07580) | - | 1555672..1556667 (-) | 996 | WP_000468428.1 | PDZ domain-containing protein | - |
| BXP05_RS07590 (BXP05_07585) | - | 1556667..1556969 (-) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| BXP05_RS07595 (BXP05_07590) | panD | 1556972..1557325 (-) | 354 | WP_000142236.1 | aspartate 1-decarboxylase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42295.98 Da Isoelectric Point: 10.0478
>NTDB_id=251657 BXP05_RS07560 WP_001045869.1 1551628..1552764(-) (comB10) [Helicobacter pylori strain 7.13_R3a]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKSLQEQLKA
ALKALKSKEMNHSKEETFKSPPIDLKANTTPPKKDFSLKQWDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKSLQEQLKA
ALKALKSKEMNHSKEETFKSPPIDLKANTTPPKKDFSLKQWDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=251657 BXP05_RS07560 WP_001045869.1 1551628..1552764(-) (comB10) [Helicobacter pylori strain 7.13_R3a]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATTTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCAAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAATCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAAATCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATGGGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GAATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATTTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCAAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAATCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAAATCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATGGGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GAATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.032 |
100 |
0.96 |