Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | BXP04_RS07555 | Genome accession | NZ_CP024076 |
| Coordinates | 1551616..1552752 (-) | Length | 378 a.a. |
| NCBI ID | WP_001045869.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 7.13_R2c | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1546616..1557752
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BXP04_RS07535 (BXP04_07525) | hypE | 1546731..1547729 (+) | 999 | WP_000378855.1 | hydrogenase expression/formation protein HypE | - |
| BXP04_RS07540 (BXP04_07530) | - | 1548036..1548968 (-) | 933 | WP_001006014.1 | GDP-L-fucose synthase family protein | - |
| BXP04_RS07545 (BXP04_07535) | gmd | 1548961..1550106 (-) | 1146 | WP_000659801.1 | GDP-mannose 4,6-dehydratase | - |
| BXP04_RS07550 (BXP04_07540) | - | 1550134..1551546 (-) | 1413 | WP_001861341.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| BXP04_RS07555 (BXP04_07545) | comB10 | 1551616..1552752 (-) | 1137 | WP_001045869.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| BXP04_RS07560 (BXP04_07550) | comB9 | 1552745..1553728 (-) | 984 | WP_001861340.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| BXP04_RS07565 (BXP04_07555) | comB8 | 1553728..1554471 (-) | 744 | WP_000660520.1 | type IV secretion system protein | Machinery gene |
| BXP04_RS07570 (BXP04_07560) | comB7 | 1554468..1554581 (-) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| BXP04_RS07575 (BXP04_07565) | comB6 | 1554597..1555652 (-) | 1056 | WP_000786677.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| BXP04_RS07580 (BXP04_07570) | - | 1555660..1556655 (-) | 996 | WP_000468428.1 | PDZ domain-containing protein | - |
| BXP04_RS07585 (BXP04_07575) | - | 1556655..1556957 (-) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| BXP04_RS07590 (BXP04_07580) | panD | 1556960..1557313 (-) | 354 | WP_000142236.1 | aspartate 1-decarboxylase | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42295.98 Da Isoelectric Point: 10.0478
>NTDB_id=251634 BXP04_RS07555 WP_001045869.1 1551616..1552752(-) (comB10) [Helicobacter pylori strain 7.13_R2c]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKSLQEQLKA
ALKALKSKEMNHSKEETFKSPPIDLKANTTPPKKDFSLKQWDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKSLQEQLKA
ALKALKSKEMNHSKEETFKSPPIDLKANTTPPKKDFSLKQWDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=251634 BXP04_RS07555 WP_001045869.1 1551616..1552752(-) (comB10) [Helicobacter pylori strain 7.13_R2c]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATTTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCAAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAATCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAAATCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATGGGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GAATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATTTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCAAATCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAATCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAAATCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATGGGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTTATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCCTAGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GAATCACTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.032 |
100 |
0.96 |