Detailed information NTG0251622

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: BXP04_RS02620
• Genome accession: NZ_CP024076
• Coordinates: 517920..519128 (-)
• Length: 402 a.a.
• NCBI ID: WP_000814183.1
• Uniprot ID: D7FD44
• Organism: Helicobacter pylori strain 7.13_R2c
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 512920..524128

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BXP04_RS02595 (BXP04_02585)	-	512965..513483 (-)	519	WP_000760576.1	hypothetical protein	-
BXP04_RS02600 (BXP04_02590)	-	513480..514424 (-)	945	WP_000362464.1	CpaF/VirB11 family protein	-
BXP04_RS02605 (BXP04_02595)	-	514429..514704 (-)	276	WP_001278752.1	hypothetical protein	-
BXP04_RS02610 (BXP04_02600)	-	514721..515683 (-)	963	WP_001095495.1	hypothetical protein	-
BXP04_RS02615 (BXP04_02605)	-	515696..517936 (-)	2241	WP_000730437.1	collagen-like protein	-
BXP04_RS02620 (BXP04_02610)	comB10	517920..519128 (-)	1209	WP_000814183.1	DNA type IV secretion system protein ComB10	Machinery gene
BXP04_RS02625 (BXP04_02615)	-	519125..520780 (-)	1656	WP_000617227.1	TrbG/VirB9 family P-type conjugative transfer protein	-
BXP04_RS02630 (BXP04_02620)	-	520777..521913 (-)	1137	WP_000067692.1	VirB8/TrbF family protein	-
BXP04_RS08395 (BXP04_02625)	-	521906..522046 (-)	141	WP_000789929.1	hypothetical protein	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 44988.57 Da
• Isoelectric Point: 10.0507

>NTDB_id=251622 BXP04_RS02620 WP_000814183.1 517920..519128(-) (comB10) [Helicobacter pylori strain 7.13_R2c]
MKQSLLKKIGLGVGGFVVLMALGLLANKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPDTEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEILAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide

• Length: 1209 bp

>NTDB_id=251622 BXP04_RS02620 WP_000814183.1 517920..519128(-) (comB10) [Helicobacter pylori strain 7.13_R2c]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGATACGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
TTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAAGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGATTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterProScan.

• Bacterial conjugation TrbI-like protein (TrbI) (178-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.43	97.264	0.51