Detailed information NTG0251612

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: BXP03_RS07570
• Genome accession: NZ_CP024075
• Coordinates: 1552763..1553746 (-)
• Length: 327 a.a.
• NCBI ID: WP_001861340.1
• Uniprot ID: D7FG34
• Organism: Helicobacter pylori strain 7.13_R2b
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1547763..1558746

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BXP03_RS07550 (BXP03_07545)	-	1548054..1548986 (-)	933	WP_001006014.1	GDP-L-fucose synthase family protein	-
BXP03_RS07555 (BXP03_07550)	gmd	1548979..1550124 (-)	1146	WP_000659801.1	GDP-mannose 4,6-dehydratase	-
BXP03_RS07560 (BXP03_07555)	-	1550152..1551564 (-)	1413	WP_001861341.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
BXP03_RS07565 (BXP03_07560)	comB10	1551634..1552770 (-)	1137	WP_001045869.1	DNA type IV secretion system protein ComB10	Machinery gene
BXP03_RS07570 (BXP03_07565)	comB9	1552763..1553746 (-)	984	WP_001861340.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
BXP03_RS07575 (BXP03_07570)	comB8	1553746..1554489 (-)	744	WP_000660520.1	type IV secretion system protein	Machinery gene
BXP03_RS07580 (BXP03_07575)	comB7	1554486..1554599 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
BXP03_RS07585 (BXP03_07580)	comB6	1554615..1555670 (-)	1056	WP_000786677.1	P-type conjugative transfer protein TrbL	Machinery gene
BXP03_RS07590 (BXP03_07585)	-	1555678..1556673 (-)	996	WP_000468428.1	PDZ domain-containing protein	-
BXP03_RS07595 (BXP03_07590)	-	1556673..1556975 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
BXP03_RS07600 (BXP03_07595)	panD	1556978..1557331 (-)	354	WP_000142236.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37670.47 Da
• Isoelectric Point: 9.4540

>NTDB_id=251612 BXP03_RS07570 WP_001861340.1 1552763..1553746(-) (comB9) [Helicobacter pylori strain 7.13_R2b]
MRKFLYALMGFLLVFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENAFENAPTNNKPLKEEPLKAGKEEAKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLG
ICSKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRF
VKKGKDE

Nucleotide

• Length: 984 bp

>NTDB_id=251612 BXP03_RS07570 WP_001861340.1 1552763..1553746(-) (comB9) [Helicobacter pylori strain 7.13_R2b]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTATTGGTTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGACAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATGCCTTTGAAAATGCCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGCAGGAAAAGAAGAAGCCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACTAACG
CCATGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGG
ATTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAAATACTAGGATTG
TGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTT
GTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

3D structure

• AlphaFold DB: D7FG34

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.749	100	0.939