Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CRT55_RS19375 Genome accession   NZ_CP024056
Coordinates   3318281..3318910 (-) Length   209 a.a.
NCBI ID   WP_032186268.1    Uniprot ID   -
Organism   Escherichia coli strain SMN197SH3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3307203..3330084 3318281..3318910 within 0


Gene organization within MGE regions


Location: 3307203..3330084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT55_RS19315 (CRT55_19215) - 3307203..3308222 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  CRT55_RS19320 (CRT55_19220) yccA 3308630..3309289 (+) 660 WP_062882278.1 FtsH protease modulator YccA -
  CRT55_RS19325 (CRT55_19225) tusE 3309380..3309709 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  CRT55_RS19330 (CRT55_19230) yccX 3309706..3309984 (-) 279 WP_000048252.1 acylphosphatase -
  CRT55_RS19335 (CRT55_19235) rlmI 3310079..3311269 (+) 1191 WP_062882280.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  CRT55_RS19340 (CRT55_19240) hspQ 3311327..3311644 (+) 318 WP_001295356.1 heat shock protein HspQ -
  CRT55_RS19345 (CRT55_19245) yccU 3311689..3312102 (-) 414 WP_001343235.1 CoA-binding protein -
  CRT55_RS19350 (CRT55_19250) yccT 3312275..3312937 (+) 663 WP_060616790.1 DUF2057 family protein -
  CRT55_RS19355 (CRT55_19255) mgsA 3313033..3313491 (+) 459 WP_000424181.1 methylglyoxal synthase -
  CRT55_RS19360 (CRT55_19260) helD 3313523..3315577 (-) 2055 WP_000420537.1 DNA helicase IV -
  CRT55_RS19365 (CRT55_19265) yccF 3315700..3316146 (+) 447 WP_062882281.1 YccF domain-containing protein -
  CRT55_RS19370 (CRT55_19270) yccS 3316156..3318318 (+) 2163 WP_074434046.1 YccS family putative transporter -
  CRT55_RS19375 (CRT55_19275) sxy/tfoX 3318281..3318910 (-) 630 WP_032186268.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CRT55_RS19380 (CRT55_19280) sulA 3319129..3319638 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CRT55_RS19390 (CRT55_19290) ompA 3319995..3321035 (+) 1041 WP_062882317.1 porin OmpA -
  CRT55_RS19395 (CRT55_19295) matP 3321111..3321563 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CRT55_RS19400 (CRT55_19300) ycbZ 3321749..3323509 (+) 1761 WP_062882282.1 Lon protease family protein -
  CRT55_RS19405 (CRT55_19305) fabA 3323578..3324096 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  CRT55_RS19410 (CRT55_19310) rmf 3324166..3324333 (-) 168 WP_000828648.1 ribosome modulation factor -
  CRT55_RS19415 (CRT55_19315) pqiC 3324589..3325152 (-) 564 WP_000759129.1 membrane integrity-associated transporter subunit PqiC -
  CRT55_RS19420 (CRT55_19320) pqiB 3325149..3326789 (-) 1641 WP_000445561.1 intermembrane transport protein PqiB -
  CRT55_RS19425 (CRT55_19325) pqiA 3326794..3328047 (-) 1254 WP_062882283.1 membrane integrity-associated transporter subunit PqiA -
  CRT55_RS19430 (CRT55_19330) uup 3328177..3330084 (-) 1908 WP_062882284.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.04 Da        Isoelectric Point: 8.9883

>NTDB_id=251467 CRT55_RS19375 WP_032186268.1 3318281..3318910(-) (sxy/tfoX) [Escherichia coli strain SMN197SH3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLWQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=251467 CRT55_RS19375 WP_032186268.1 3318281..3318910(-) (sxy/tfoX) [Escherichia coli strain SMN197SH3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGTGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment