Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CSC24_RS19240 Genome accession   NZ_CP029108
Coordinates   3415168..3416595 (-) Length   475 a.a.
NCBI ID   WP_000980615.1    Uniprot ID   -
Organism   Escherichia coli strain AR437     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3410168..3421595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC24_RS19205 (CSC24_3381) yeeY 3410552..3411481 (+) 930 WP_000803370.1 LysR substrate-binding domain-containing protein -
  CSC24_RS19210 yoeI 3411696..3411758 (+) 63 WP_010723108.1 membrane protein YoeI -
  CSC24_RS19215 (CSC24_3383) plaP 3411748..3413106 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CSC24_RS19230 (CSC24_3385) tsuA 3413925..3414884 (+) 960 Protein_3185 YeeE/YedE family protein -
  CSC24_RS19235 (CSC24_3386) tsuB 3414898..3415125 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CSC24_RS19240 (CSC24_3387) sbcB 3415168..3416595 (-) 1428 WP_000980615.1 exodeoxyribonuclease I Machinery gene
  CSC24_RS19245 (CSC24_3388) dacD 3416804..3417970 (+) 1167 WP_046660321.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CSC24_RS19250 (CSC24_3389) sbmC 3418089..3418562 (+) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  CSC24_RS19255 (CSC24_3390) yeeA 3418761..3419819 (+) 1059 WP_001200892.1 FUSC family protein -
  CSC24_RS19260 (CSC24_3392) tmaR 3419991..3420320 (+) 330 WP_000450409.1 DUF496 family protein -
  CSC24_RS26725 - 3420421..3420786 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  CSC24_RS26355 (CSC24_3393) - 3421057..3421446 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54444.71 Da        Isoelectric Point: 5.4700

>NTDB_id=251409 CSC24_RS19240 WP_000980615.1 3415168..3416595(-) (sbcB) [Escherichia coli strain AR437]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=251409 CSC24_RS19240 WP_000980615.1 3415168..3416595(-) (sbcB) [Escherichia coli strain AR437]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583