Detailed information NTG0251396

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CSC24_RS15635
• Genome accession: NZ_CP029108
• Coordinates: 2668911..2669903 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AR437
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2663911..2674903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CSC24_RS15605 (CSC24_2668)	ispD	2663972..2664682 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CSC24_RS15610 (CSC24_2669)	ispF	2664682..2665161 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CSC24_RS15615 (CSC24_2670)	truD	2665158..2666207 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CSC24_RS15620 (CSC24_2671)	surE	2666188..2666949 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
CSC24_RS15625 (CSC24_2672)	pcm	2666943..2667569 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CSC24_RS15630 (CSC24_2673)	nlpD	2667754..2668848 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CSC24_RS15635 (CSC24_2674)	rpoS	2668911..2669903 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CSC24_RS15640 (CSC24_2675)	ygbN	2669997..2671361 (-)	1365	WP_000104456.1	GntP family transporter	-
CSC24_RS15645 (CSC24_2676)	ygbM	2671450..2672226 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
CSC24_RS15650 (CSC24_2677)	ygbL	2672231..2672869 (-)	639	WP_001278994.1	aldolase	-
CSC24_RS15655 (CSC24_2678)	otnK	2672866..2674128 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=251396 CSC24_RS15635 WP_000081550.1 2668911..2669903(+) (rpoS) [Escherichia coli strain AR437]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=251396 CSC24_RS15635 WP_000081550.1 2668911..2669903(+) (rpoS) [Escherichia coli strain AR437]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715