Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL-C   Type   Machinery gene
Locus tag   SYNPCC7942_RS05210 Genome accession   NC_007604
Coordinates   1025629..1028415 (-) Length   928 a.a.
NCBI ID   WP_011377831.1    Uniprot ID   Q31PH5
Organism   Synechococcus elongatus PCC 7942 = FACHB-805     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1020629..1033415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SYNPCC7942_RS05180 (Synpcc7942_1009) - 1021351..1021950 (-) 600 WP_011377828.1 helix-turn-helix domain-containing protein -
  SYNPCC7942_RS05185 (Synpcc7942_1010) - 1021969..1022700 (-) 732 WP_011242847.1 pseudouridine synthase -
  SYNPCC7942_RS05190 (Synpcc7942_1011) - 1022715..1023956 (-) 1242 WP_011377829.1 sensor histidine kinase -
  SYNPCC7942_RS05195 (Synpcc7942_1012) - 1023969..1024742 (-) 774 WP_011242845.1 response regulator transcription factor -
  SYNPCC7942_RS05205 (Synpcc7942_1013) - 1025389..1025625 (-) 237 WP_011377830.1 hypothetical protein -
  SYNPCC7942_RS05210 (Synpcc7942_1014) pilL-C 1025629..1028415 (-) 2787 WP_011377831.1 hybrid sensor histidine kinase/response regulator Machinery gene
  SYNPCC7942_RS05215 (Synpcc7942_1015) - 1028418..1030937 (-) 2520 WP_011242843.1 methyl-accepting chemotaxis protein -
  SYNPCC7942_RS05220 (Synpcc7942_1016) - 1030953..1031435 (-) 483 WP_011242842.1 chemotaxis protein CheW -
  SYNPCC7942_RS05230 (Synpcc7942_1017) - 1031697..1032458 (-) 762 WP_011377832.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SYNPCC7942_RS05235 (Synpcc7942_1018) - 1032577..1033212 (+) 636 WP_011242840.1 hypothetical protein -

Sequence

Protein


Download         Length: 928 a.a.        Molecular weight: 102825.13 Da        Isoelectric Point: 4.4486

>NTDB_id=25137 SYNPCC7942_RS05210 WP_011377831.1 1025629..1028415(-) (pilL-C) [Synechococcus elongatus PCC 7942 = FACHB-805]
MSSTSDNVLRSLFLRETRENLQLLTQMIGQMEAGLPDAKTFADASRAAHSLKGGAALLKFETFRQLAAGLETCLSLLSEA
ELPDYEVSLPLFQRAAALLITATDRIEAGVEEQAVVPEEGNPLIEQLQVLQEMLQAAVQVPPDQSAVTSTLEDLLTQDFE
TVLLPPTPDLEQTLDQLLGDLEETPSPIAGQGSDGDRPALEDLNFDLEDWIEASEEESETVEIDIVAQVKALEAAIADLT
QHPHEQPLSLGIKDDILSAVIQAAPRLPVALTLEPVAKARTQDNGKTPVVFEQTLRVPVRQLDNLSNLVGEIVVSRNTLE
SDQSHLRETLENLMLQVHQLGDLGERMRELYERSLLETALAARRQLVGSSTAAGSAGASTFPTEQFDDLELDRFSGFHSI
SQEMMELLVRLREAASDIDFMVNEPFDQLTRNFQQITLQLQSELNQTRMVPFSDLTDQLPRAVREISRRCGKGARLEIEG
KDILIDKMILQKLQAPMTHLINNALSHGIETAEIRQYRNKSAEGTLVVRASLQGNRTLITVTDDGAGIDAEQVKLKALAR
GLITPEEAAGMRVREIYELLFRPGFSTRDQADELAGRGVGLDVVRRALHEIQGEIVVDSELGKGTTFTFRLPLTLSITKA
LTCLHERARLAFPMDSVEEMLDIPQQRLAMDPQGQLRLDWHNLSLPVFPLSSLLDFHLPFGRSRYYNSLGDDGVVSIVVL
RNDNEYLAVQTDQIEGEREIVIKQIEGPIAKPLGILGITVRSDGQVMPIVDVLELFDIAYGRVRQRQVAPVAPSAGETRT
NTEPMVLIVDDSITVRELLSMTFKKAGYVVEQARNGQEALEKLYSGLPCDLVFCDIEMPKMNGLELLERLQADPKLRSLP
VAMLTSRGADRHRQIAAHLGARAYFTKPYLEEQLLEASARLRNGERLI

Nucleotide


Download         Length: 2787 bp        

>NTDB_id=25137 SYNPCC7942_RS05210 WP_011377831.1 1025629..1028415(-) (pilL-C) [Synechococcus elongatus PCC 7942 = FACHB-805]
ATGTCGTCCACCAGTGATAACGTTTTGCGATCGCTGTTTCTACGAGAAACGCGTGAAAATCTCCAGCTGCTGACCCAGAT
GATTGGCCAGATGGAAGCTGGGCTGCCGGATGCAAAAACCTTTGCAGACGCTTCGCGGGCCGCGCATTCGCTCAAGGGTG
GAGCCGCCCTGCTCAAGTTCGAAACCTTCCGGCAACTGGCAGCTGGACTCGAGACTTGCCTGTCTCTGCTATCTGAAGCC
GAGTTGCCCGACTACGAGGTGAGTCTCCCGCTGTTTCAACGGGCCGCCGCGCTGCTGATTACGGCGACCGATCGCATTGA
AGCGGGCGTTGAAGAGCAGGCTGTGGTGCCCGAGGAAGGGAACCCCCTGATTGAACAGCTCCAGGTTTTGCAGGAGATGC
TGCAGGCAGCTGTGCAAGTGCCACCGGATCAATCCGCCGTTACCAGCACGCTCGAAGACTTGCTGACCCAAGATTTTGAG
ACAGTCTTGCTGCCGCCGACTCCTGATTTGGAGCAGACCCTCGATCAGCTCCTGGGCGACCTCGAGGAAACTCCCAGCCC
GATCGCTGGCCAGGGAAGCGACGGCGATCGCCCAGCTTTAGAGGACCTCAACTTTGACCTCGAGGACTGGATTGAGGCCA
GCGAAGAAGAGTCTGAGACGGTCGAAATCGACATTGTGGCCCAGGTCAAAGCCCTGGAAGCTGCGATCGCTGACTTGACG
CAGCACCCCCACGAGCAGCCCCTCAGCTTGGGCATCAAGGACGACATTCTGAGTGCGGTCATCCAAGCCGCTCCCCGTCT
GCCGGTGGCCCTGACGCTAGAGCCAGTGGCTAAGGCCCGTACCCAGGACAATGGCAAAACCCCCGTTGTCTTTGAACAGA
CTCTGCGGGTGCCGGTGCGTCAGTTGGATAACCTCAGCAACCTAGTCGGGGAGATTGTCGTCAGCCGGAATACCCTCGAA
AGCGATCAGTCCCACCTACGGGAAACCCTCGAAAACCTGATGCTACAGGTGCACCAGCTGGGTGATTTGGGTGAGCGGAT
GCGGGAGCTCTACGAGCGATCGCTTCTGGAAACTGCCCTCGCTGCACGTCGCCAACTAGTTGGTAGTTCTACAGCCGCTG
GCTCTGCCGGAGCTTCGACCTTTCCCACCGAGCAATTCGACGACCTCGAACTCGATCGCTTTAGTGGTTTCCATTCCATT
TCTCAAGAAATGATGGAATTGCTAGTCCGTCTGCGCGAGGCAGCCTCGGACATTGACTTCATGGTCAATGAACCCTTTGA
CCAACTGACCCGCAACTTCCAGCAAATTACCCTGCAGTTGCAAAGCGAGTTGAACCAGACTCGAATGGTCCCCTTCTCGG
ACCTGACGGATCAACTGCCACGGGCTGTCCGCGAAATCTCACGGCGCTGTGGCAAGGGTGCCCGTCTGGAGATCGAAGGG
AAAGACATCTTGATTGACAAGATGATCCTGCAGAAACTGCAGGCGCCCATGACTCACCTGATCAACAACGCCCTCAGTCA
TGGCATTGAAACGGCAGAAATTCGCCAATACCGCAATAAATCAGCGGAGGGAACCCTGGTCGTTCGTGCCTCACTCCAGG
GCAATCGGACCCTAATCACTGTTACCGATGATGGGGCCGGGATCGATGCTGAGCAGGTCAAGCTCAAAGCTTTGGCACGG
GGTTTGATCACCCCAGAAGAAGCCGCAGGGATGCGGGTGCGGGAGATCTATGAACTCCTGTTCCGACCCGGCTTCAGTAC
CCGAGATCAGGCCGATGAATTGGCGGGCCGCGGGGTGGGGCTAGATGTGGTTCGCCGGGCGCTCCATGAAATTCAGGGCG
AGATCGTGGTGGATTCGGAGCTGGGGAAAGGGACAACCTTTACCTTCCGCTTGCCCCTCACTCTCTCGATTACCAAGGCT
TTGACCTGCCTCCACGAACGGGCGCGTTTGGCCTTCCCGATGGATAGCGTTGAGGAAATGCTGGATATTCCCCAGCAGCG
CCTCGCGATGGATCCCCAGGGGCAGTTGCGCCTGGATTGGCACAATTTGTCGCTCCCCGTCTTCCCGCTCTCATCCCTCC
TCGACTTCCATCTGCCGTTTGGGCGATCGCGCTATTACAACAGTCTGGGCGATGACGGTGTCGTCTCGATTGTCGTTCTG
CGTAATGACAACGAGTACCTCGCCGTTCAGACCGATCAGATTGAAGGGGAACGGGAAATTGTGATCAAGCAGATCGAAGG
TCCGATCGCCAAACCCCTCGGGATCTTGGGCATCACCGTCCGCTCTGACGGTCAGGTCATGCCGATCGTGGACGTCTTGG
AACTGTTTGATATTGCCTACGGCCGCGTCCGTCAGCGTCAAGTAGCCCCCGTAGCCCCCAGTGCTGGCGAGACGAGAACC
AATACAGAACCGATGGTGCTGATCGTCGATGACTCGATCACGGTGCGTGAGCTGCTGTCGATGACCTTCAAAAAGGCGGG
CTATGTGGTGGAACAAGCGCGCAACGGCCAAGAAGCCCTAGAGAAGCTCTATTCGGGTCTGCCCTGCGATTTGGTTTTCT
GCGATATCGAAATGCCGAAGATGAATGGGCTAGAGCTCTTAGAGCGGCTTCAGGCTGATCCCAAGCTGCGGAGTTTACCG
GTGGCGATGCTGACATCGCGAGGCGCTGATCGCCATCGTCAAATTGCTGCCCACTTGGGCGCTCGGGCTTACTTCACAAA
ACCCTATCTAGAAGAGCAGCTGTTGGAAGCCTCGGCTCGCTTGAGAAATGGCGAACGACTCATTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(806-917)

Hpt domain (Hpt)

(9-94)

Signal transducing histidine kinase, homodimeric domain (H-kinase_dim)

(293-367)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(496-634)

CheW-like domain (CheW)

(641-777)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q31PH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL-C Synechocystis sp. PCC 6803

55.573

70.582

0.392

Multiple sequence alignment