Detailed information NTG0025128

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SYNPCC7942_RS02895
• Genome accession: NC_007604
• Coordinates: 550718..551653 (-)
• Length: 311 a.a.
• NCBI ID: WP_011243265.1
• Uniprot ID: Q31QR8
• Organism: Synechococcus elongatus PCC 7942 = FACHB-805
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 545718..556653

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SYNPCC7942_RS02870 (Synpcc7942_0564)	-	545774..546487 (+)	714	WP_011243270.1	DevA family ABC transporter ATP-binding protein	-
SYNPCC7942_RS02875 (Synpcc7942_0565)	-	546588..547250 (+)	663	WP_011243269.1	FHA domain-containing protein	-
SYNPCC7942_RS02880 (Synpcc7942_0566)	-	547247..548017 (+)	771	WP_011243268.1	HAD family hydrolase	-
SYNPCC7942_RS02885 (Synpcc7942_0567)	-	548019..549368 (-)	1350	WP_011377626.1	FAD-binding oxidoreductase	-
SYNPCC7942_RS02890 (Synpcc7942_0568)	-	549371..550687 (-)	1317	WP_011377627.1	cytosine deaminase	-
SYNPCC7942_RS02895 (Synpcc7942_0569)	rpoS	550718..551653 (-)	936	WP_011243265.1	RpoD/SigA family RNA polymerase sigma factor	Regulator
SYNPCC7942_RS02900 (Synpcc7942_0570)	-	551878..553221 (-)	1344	WP_011243264.1	trans-splicing intein-formed DNA polymerase III subunit alpha C-terminal partner DnaE-C	-
SYNPCC7942_RS02905 (Synpcc7942_0571)	-	553324..554697 (-)	1374	WP_011243263.1	MFS transporter	-
SYNPCC7942_RS02910 (Synpcc7942_0572)	-	554694..555134 (-)	441	WP_011377628.1	VOC family protein	-
SYNPCC7942_RS02920 (Synpcc7942_0573)	-	555297..555533 (-)	237	WP_011377629.1	hypothetical protein	-
SYNPCC7942_RS02925 (Synpcc7942_0574)	-	555612..556442 (+)	831	WP_011243261.1	DUF3598 family protein	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35587.81 Da
• Isoelectric Point: 8.3029

>NTDB_id=25128 SYNPCC7942_RS02895 WP_011243265.1 550718..551653(-) (rpoS) [Synechococcus elongatus PCC 7942 = FACHB-805]
MNVQERRNLNAAVERHTSDHVSWYLSSIGRIPLLTAEEEVELSRKVQLMMALLENPDAESNSENQAVLQAGQRAKTKMLK
ANLRLVVSVAKKYQNQGLELLDLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKIS
RIKKMTRELTHQLKRLPSRAEIAEALKLPLQDVEMLLSQSTPCTSLDAQARGDDGRSFLGDLIPDPKSLEPMDAMDRHIQ
HEQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRRLNVSRERIRQVEARALQKLRVLSQQPLCPEAC

Nucleotide

• Length: 936 bp

>NTDB_id=25128 SYNPCC7942_RS02895 WP_011243265.1 550718..551653(-) (rpoS) [Synechococcus elongatus PCC 7942 = FACHB-805]
ATGAACGTACAGGAACGCCGAAACCTGAACGCAGCGGTTGAGCGACACACCAGTGATCATGTCAGCTGGTATCTCAGTTC
AATCGGTAGAATTCCGCTCCTCACTGCCGAGGAAGAGGTTGAACTCTCACGCAAGGTTCAACTGATGATGGCATTGTTGG
AAAACCCAGATGCCGAGAGCAATTCAGAGAACCAAGCGGTCTTACAGGCCGGTCAAAGAGCGAAAACAAAAATGCTCAAA
GCCAACCTCCGGTTGGTTGTGAGTGTTGCGAAGAAATACCAGAATCAAGGCCTAGAACTACTCGACTTGATCCAAGAAGG
GTCACTTGGTTTAGAGCGAGCAGTTGAAAAATTTGACCCAGCCTTGGGTTATAAATTCTCGACCTACGCTTACTGGTGGA
TTCGCCAAAGCATGACTCGGGCGATCGACAATCATGCCCGCACGATTCGTCTTCCCATTCATGTCAGCGAGAAAATTAGC
CGCATCAAAAAAATGACGCGAGAGCTGACTCATCAGCTCAAGCGATTGCCCAGCCGTGCCGAAATCGCTGAGGCGTTAAA
GTTGCCGCTTCAAGATGTAGAAATGCTGCTCAGCCAATCGACCCCCTGCACCAGCTTGGATGCCCAAGCACGGGGCGACG
ATGGCCGCAGCTTCTTGGGAGACTTGATTCCGGATCCCAAGAGTCTAGAGCCGATGGACGCCATGGATCGCCACATCCAG
CACGAGCAAATCTCGACTTGGTTGGCACACCTGACCGAACGTGAGCAGCAGGTCTTGCAACTGCGCTTTGGTCTCCACGA
CGGCGAGCAACACACCTTGGCGGAAATTGGTCGGCGGCTGAATGTGTCCCGCGAACGGATTCGTCAAGTTGAAGCTCGGG
CACTGCAAAAACTGCGGGTCTTGAGTCAACAACCGCTTTGCCCAGAGGCTTGCTAG

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (247-299)

• Sigma-70 region 3 (Sigma70_r3) (157-234)

• Sigma-70 region 2 (Sigma70_r2) (79-147)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (19-48)

3D structure

• AlphaFold DB: Q31QR8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	41.497	94.534	0.392