Detailed information NTG0251223

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: CNX73_RS07560
• Genome accession: NZ_CP024023
• Coordinates: 1552750..1553733 (-)
• Length: 327 a.a.
• NCBI ID: WP_001861340.1
• Uniprot ID: D7FG34
• Organism: Helicobacter pylori isolate 7.13_D3c
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1547750..1558733

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CNX73_RS07540 (CNX73_07535)	-	1548041..1548973 (-)	933	WP_001006014.1	GDP-L-fucose synthase family protein	-
CNX73_RS07545 (CNX73_07540)	gmd	1548966..1550111 (-)	1146	WP_000659801.1	GDP-mannose 4,6-dehydratase	-
CNX73_RS07550 (CNX73_07545)	-	1550139..1551551 (-)	1413	WP_001861341.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
CNX73_RS07555 (CNX73_07550)	comB10	1551621..1552757 (-)	1137	WP_001045869.1	DNA type IV secretion system protein ComB10	Machinery gene
CNX73_RS07560 (CNX73_07555)	comB9	1552750..1553733 (-)	984	WP_001861340.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
CNX73_RS07565 (CNX73_07560)	comB8	1553733..1554476 (-)	744	WP_000660520.1	type IV secretion system protein	Machinery gene
CNX73_RS07570 (CNX73_07565)	comB7	1554473..1554586 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
CNX73_RS07575 (CNX73_07570)	comB6	1554602..1555657 (-)	1056	WP_000786677.1	P-type conjugative transfer protein TrbL	Machinery gene
CNX73_RS07580 (CNX73_07575)	-	1555665..1556660 (-)	996	WP_000468428.1	PDZ domain-containing protein	-
CNX73_RS07585 (CNX73_07580)	-	1556660..1556962 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
CNX73_RS07590 (CNX73_07585)	panD	1556965..1557318 (-)	354	WP_000142236.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37670.47 Da
• Isoelectric Point: 9.4540

>NTDB_id=251223 CNX73_RS07560 WP_001861340.1 1552750..1553733(-) (comB9) [Helicobacter pylori isolate 7.13_D3c]
MRKFLYALMGFLLVFSVLKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENAFENAPTNNKPLKEEPLKAGKEEAKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLG
ICSKKSKLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRF
VKKGKDE

Nucleotide

• Length: 984 bp

>NTDB_id=251223 CNX73_RS07560 WP_001861340.1 1552750..1553733(-) (comB9) [Helicobacter pylori isolate 7.13_D3c]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTATTGGTTTTTAGCGTTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACCTTGAACATTGATTACTTTCAAGGGCAAACTTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGACAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATGCCTTTGAAAATGCCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGCAGGAAAAGAAGAAGCCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCGATAACACTAACG
CCATGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGG
ATTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAAATACTAGGATTG
TGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTGTGTATCCGTTTT
GTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

3D structure

• AlphaFold DB: D7FG34

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.749	100	0.939