Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   BS636_RS07700 Genome accession   NZ_CP024011
Coordinates   1598243..1599106 (+) Length   287 a.a.
NCBI ID   WP_213064238.1    Uniprot ID   -
Organism   Acinetobacter sp. LoGeW2-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593243..1604106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS636_RS07675 (BS636_07675) - 1593598..1594800 (+) 1203 WP_099338231.1 CsgG/HfaB family protein -
  BS636_RS07680 (BS636_07680) - 1594887..1595561 (+) 675 WP_099339626.1 hypothetical protein -
  BS636_RS07685 (BS636_07685) - 1595768..1596343 (-) 576 WP_099338232.1 xanthine phosphoribosyltransferase -
  BS636_RS07690 (BS636_07690) - 1596434..1597147 (-) 714 WP_099338233.1 DUF3108 domain-containing protein -
  BS636_RS07695 (BS636_07695) - 1597286..1597975 (-) 690 WP_099338234.1 hypothetical protein -
  BS636_RS07700 (BS636_07700) tonB2 1598243..1599106 (+) 864 WP_213064238.1 energy transducer TonB Machinery gene
  BS636_RS07705 (BS636_07705) - 1599103..1599402 (-) 300 WP_099338235.1 antibiotic biosynthesis monooxygenase family protein -
  BS636_RS07710 (BS636_07710) - 1599498..1599815 (-) 318 WP_228206889.1 hypothetical protein -
  BS636_RS07715 (BS636_07715) ybeY 1600144..1600626 (-) 483 WP_099338237.1 rRNA maturation RNase YbeY -
  BS636_RS07720 (BS636_07720) - 1600649..1601725 (-) 1077 WP_099338238.1 PhoH family protein -
  BS636_RS07725 (BS636_07725) miaB 1601765..1603222 (-) 1458 WP_099338239.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32816.29 Da        Isoelectric Point: 7.5214

>NTDB_id=251145 BS636_RS07700 WP_213064238.1 1598243..1599106(+) (tonB2) [Acinetobacter sp. LoGeW2-3]
MPLVKSWWKDPVFSSAVVIAAVLHVMILMLQFGMPSEQDTSTKEIAVSLRISNDKIEHADFLAQTDQQGSGQFREAHRMS
SDVPLPMPDQTAGKEESHQNSSDMLQQKQELSFEEKVLMTTMSWQKQAEENQRKKRQEELNSQFQAKAAMVASLEAQYTQ
RQKNFSRQQKIKTVDGIQAKQDESAAYLEKFRQKVEFYGNRFYPDSARVQHLAGDVRLMVILNQNGGIRAIRLLESSGHT
VLDEAAKMSLRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 864 bp        

>NTDB_id=251145 BS636_RS07700 WP_213064238.1 1598243..1599106(+) (tonB2) [Acinetobacter sp. LoGeW2-3]
ATGCCGTTGGTTAAATCATGGTGGAAAGATCCTGTTTTTAGCAGTGCTGTAGTTATTGCTGCAGTATTGCATGTCATGAT
TTTAATGCTGCAGTTTGGTATGCCGTCAGAACAGGATACTTCAACCAAGGAAATCGCGGTCAGTCTGCGAATTAGCAATG
ATAAAATCGAACATGCCGATTTTCTGGCTCAAACGGATCAGCAGGGTTCTGGTCAGTTCCGTGAAGCACATCGTATGTCC
AGCGATGTTCCATTGCCAATGCCGGATCAAACCGCGGGGAAAGAAGAATCACATCAGAACAGCTCAGACATGCTGCAGCA
AAAGCAGGAGTTGAGCTTTGAAGAAAAAGTCCTGATGACAACGATGAGTTGGCAAAAACAGGCAGAAGAAAACCAGCGCA
AGAAACGTCAGGAAGAACTGAATAGCCAGTTTCAAGCCAAGGCTGCCATGGTCGCTAGTCTGGAAGCTCAATATACACAG
CGCCAGAAAAACTTTAGCCGTCAGCAGAAAATCAAGACAGTGGATGGTATTCAGGCTAAGCAAGATGAATCCGCCGCATA
TTTAGAAAAATTCCGTCAAAAAGTCGAATTTTATGGCAACCGTTTTTATCCAGATTCCGCACGGGTACAGCACTTGGCGG
GTGATGTCCGCCTTATGGTGATTCTGAATCAGAATGGAGGCATTCGTGCCATTCGCTTGCTGGAGTCTTCTGGACATACG
GTGCTGGATGAGGCAGCGAAAATGTCATTGCGTAAGGCTGCGCCGTTTGGTGCCTTTGATGCCAAAATGAAAGATATTTC
AGAATTACGAATTATCCGAACCTGGCGTTTTGATCCGGCTGAAGCAGAATTTGAAGTACGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(201-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

70.463

97.909

0.69

Multiple sequence alignment