Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NMUL_RS09445 Genome accession   NC_007614
Coordinates   2061303..2062661 (-) Length   452 a.a.
NCBI ID   WP_011381120.1    Uniprot ID   Q2Y821
Organism   Nitrosospira multiformis ATCC 25196     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2056303..2067661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMUL_RS09425 (Nmul_A1799) - 2057711..2059129 (+) 1419 WP_011381116.1 DEAD/DEAH box helicase -
  NMUL_RS09430 (Nmul_A1800) - 2059209..2059568 (-) 360 WP_041352523.1 group II truncated hemoglobin -
  NMUL_RS09435 (Nmul_A1801) - 2059646..2060263 (-) 618 WP_373365298.1 DUF6962 family protein -
  NMUL_RS16375 - 2060196..2060486 (+) 291 WP_238529797.1 hypothetical protein -
  NMUL_RS09440 (Nmul_A1802) - 2060638..2061165 (+) 528 WP_011381119.1 peroxiredoxin -
  NMUL_RS09445 (Nmul_A1803) radA 2061303..2062661 (-) 1359 WP_011381120.1 DNA repair protein RadA Machinery gene
  NMUL_RS09450 (Nmul_A1804) - 2062799..2064121 (-) 1323 WP_011381121.1 FMN-binding glutamate synthase family protein -
  NMUL_RS09455 (Nmul_A1805) - 2064133..2065848 (-) 1716 WP_011381122.1 hypothetical protein -
  NMUL_RS15995 - 2066142..2066279 (+) 138 WP_167535577.1 hypothetical protein -
  NMUL_RS09460 (Nmul_A1806) - 2066384..2066776 (+) 393 WP_011381123.1 alginate export family protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 48616.16 Da        Isoelectric Point: 7.4219

>NTDB_id=25114 NMUL_RS09445 WP_011381120.1 2061303..2062661(-) (radA) [Nitrosospira multiformis ATCC 25196]
MAKSKSTYSCTECGGQTLKWQGQCPHCQAWNTLVEAMSEKAAARFTPVSESREVQSLSEVEAEEEQRYSTGLLEFDRVLG
GGLVQGGVVLLGGDPGIGKSTLLLQALCNMSLLPLARNVLYVSGEESARQVAMRAKRMGVDAKALHLLAEIRLERIQEVL
AERKPDVAVIDSIQTVYSDALQSAPGSVAQVRECAAQLTRLAKASGTGMILVGHVTKEGALAGPRVLEHMVDTVLYFEGD
THSSFRLIRAFKNRFGAVNELGVFAMTEKGLREVSNPSALFLSHHGGQVPGSCIMVTQEGTRPLLVEIQALVDEAHSPNA
RRLSVGLEQNRLAMLLAVLHRHAGIACFDQDVFVNAVGGVKITEPGADLAVLLAIVSSLKNRPLPEKTVVFGEVGLAGEV
RPVQRGLERLREAAKLGFVQAIVPKANKPKATPPGIEIIAVERVEEAVARMR

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=25114 NMUL_RS09445 WP_011381120.1 2061303..2062661(-) (radA) [Nitrosospira multiformis ATCC 25196]
ATGGCTAAATCCAAATCTACTTATTCCTGCACCGAATGCGGCGGCCAGACTTTGAAATGGCAGGGTCAATGCCCGCATTG
CCAGGCATGGAACACCCTTGTCGAGGCGATGAGCGAAAAGGCGGCAGCGCGATTCACTCCCGTCTCAGAAAGCAGGGAAG
TTCAGAGCTTGAGTGAAGTGGAAGCGGAGGAAGAGCAGCGTTATTCGACAGGTTTGCTCGAGTTTGACCGGGTGCTGGGC
GGAGGCCTTGTGCAGGGTGGTGTGGTATTGCTGGGGGGCGATCCGGGAATCGGCAAATCCACGCTGCTGCTCCAGGCATT
ATGCAATATGTCTTTGCTGCCGCTCGCGAGAAACGTGTTGTACGTGAGCGGTGAAGAGTCGGCCAGGCAGGTGGCGATGC
GCGCCAAACGAATGGGGGTCGATGCAAAGGCGTTGCATTTGCTGGCGGAAATTCGCCTGGAGCGAATCCAGGAAGTGCTG
GCCGAACGCAAGCCTGACGTGGCCGTCATCGATTCCATTCAGACAGTTTATTCCGACGCGCTGCAATCCGCTCCCGGTTC
CGTCGCCCAGGTACGCGAGTGCGCCGCGCAATTGACCCGACTCGCCAAGGCCAGCGGTACCGGCATGATTCTGGTGGGCC
ATGTGACGAAGGAGGGTGCATTGGCCGGTCCGCGCGTACTGGAGCACATGGTGGATACGGTGCTCTATTTCGAGGGCGAC
ACGCATTCGAGTTTTCGCCTGATCCGCGCCTTCAAGAACCGGTTTGGGGCAGTGAATGAACTGGGCGTTTTTGCGATGAC
TGAAAAGGGTTTGCGGGAGGTAAGCAATCCCTCGGCCTTGTTTCTTTCTCATCATGGCGGCCAGGTCCCGGGTTCCTGCA
TCATGGTGACACAGGAAGGCACCCGGCCGCTTCTCGTTGAAATCCAGGCCCTGGTGGATGAAGCGCACTCGCCTAACGCG
AGAAGGTTGAGCGTTGGACTGGAGCAGAACCGGCTTGCCATGTTGCTGGCGGTTTTGCACCGCCACGCAGGCATCGCCTG
TTTCGATCAGGATGTGTTCGTGAATGCGGTGGGGGGCGTGAAAATTACCGAACCGGGTGCCGATTTAGCTGTATTGCTGG
CAATCGTTTCCTCACTCAAGAACCGGCCGCTGCCGGAAAAAACGGTGGTGTTCGGGGAAGTGGGTCTGGCGGGAGAAGTG
CGCCCGGTCCAGCGCGGCCTGGAAAGACTGAGAGAAGCGGCCAAGCTGGGTTTTGTGCAAGCCATTGTTCCCAAGGCCAA
CAAACCGAAAGCGACGCCTCCCGGCATCGAAATCATTGCGGTGGAACGGGTGGAGGAGGCGGTTGCAAGAATGCGATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(346-427)

AAA domain (AAA_25)

(78-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2Y821

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.881

100

0.511
  radA Streptococcus mitis NCTC 12261

46.916

100

0.471
  radA Streptococcus mitis SK321

46.916

100

0.471
  radA Streptococcus pneumoniae Rx1

46.696

100

0.469
  radA Streptococcus pneumoniae D39

46.696

100

0.469
  radA Streptococcus pneumoniae R6

46.696

100

0.469
  radA Streptococcus pneumoniae TIGR4

46.696

100

0.469

Multiple sequence alignment