Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   BS636_RS04140 Genome accession   NZ_CP024011
Coordinates   860263..860586 (-) Length   107 a.a.
NCBI ID   WP_099337637.1    Uniprot ID   A0A2D1IMM3
Organism   Acinetobacter sp. LoGeW2-3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 855263..865586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS636_RS04120 (BS636_04120) - 855473..856126 (-) 654 WP_099337634.1 FHA domain-containing protein -
  BS636_RS04125 (BS636_04125) gspD 856191..858434 (-) 2244 WP_099337635.1 type II secretion system secretin GspD -
  BS636_RS04130 (BS636_04130) - 858473..859338 (-) 866 Protein_789 type II secretion system protein N -
  BS636_RS04135 (BS636_04135) gspN 859338..860081 (-) 744 WP_099337636.1 type II secretion system protein N -
  BS636_RS04140 (BS636_04140) hns 860263..860586 (-) 324 WP_099337637.1 H-NS family nucleoid-associated regulatory protein Regulator
  BS636_RS04145 (BS636_04145) - 860732..861160 (-) 429 WP_099337638.1 acyl-CoA thioesterase -
  BS636_RS04150 (BS636_04150) - 861172..862365 (-) 1194 WP_099337639.1 heme biosynthesis protein HemY -
  BS636_RS04155 (BS636_04155) - 862372..863199 (-) 828 WP_099337640.1 hypothetical protein -
  BS636_RS04160 (BS636_04160) - 863196..863975 (-) 780 WP_099337641.1 uroporphyrinogen-III synthase -
  BS636_RS04165 (BS636_04165) hemC 863981..864901 (-) 921 WP_099337642.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12203.90 Da        Isoelectric Point: 5.3249

>NTDB_id=251127 BS636_RS04140 WP_099337637.1 860263..860586(-) (hns) [Acinetobacter sp. LoGeW2-3]
MPDITNLSVEELKRLQAEAEALIASKKDQEIEDAYNQVLSIAEKVGMTIEQLLEFGASKRKKSSRKTVEPRYRSKANPEE
TWTGRGKQPRWLVAELEQGAKLEDFLI

Nucleotide


Download         Length: 324 bp        

>NTDB_id=251127 BS636_RS04140 WP_099337637.1 860263..860586(-) (hns) [Acinetobacter sp. LoGeW2-3]
ATGCCAGACATTACAAATTTATCAGTTGAAGAGTTAAAGCGTTTACAAGCTGAAGCTGAAGCATTAATCGCGTCTAAAAA
AGACCAAGAGATCGAAGATGCTTATAATCAAGTTCTCAGTATTGCAGAAAAAGTAGGTATGACTATTGAGCAGTTACTTG
AATTTGGTGCTTCTAAACGTAAGAAGTCATCTCGCAAGACTGTAGAACCACGTTACCGCAGCAAAGCAAATCCGGAAGAA
ACCTGGACAGGTCGTGGTAAACAGCCACGCTGGTTGGTTGCAGAGCTGGAACAAGGCGCCAAGCTGGAAGATTTCCTGAT
CTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(11-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1IMM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

81.132

99.065

0.804

Multiple sequence alignment