Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   CSC31_RS28565 Genome accession   NZ_CP029089
Coordinates   6068566..6068931 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain AR444     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6063566..6073931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC31_RS28530 (CSC31_5784) - 6063608..6064630 (+) 1023 WP_003101766.1 ABC transporter substrate-binding protein -
  CSC31_RS28535 (CSC31_5785) - 6064646..6065584 (+) 939 WP_003101765.1 fatty acid desaturase -
  CSC31_RS28540 (CSC31_5786) - 6065603..6066433 (+) 831 WP_071557722.1 phosphate/phosphite/phosphonate ABC transporter substrate-binding protein -
  CSC31_RS28545 (CSC31_5787) - 6066405..6067169 (-) 765 WP_001389365.1 IS6-like element IS6100 family transposase -
  CSC31_RS28555 (CSC31_5788) pilJ 6067232..6067894 (-) 663 Protein_5528 chemotaxis chemoreceptor PilJ -
  CSC31_RS28560 (CSC31_5789) - 6067979..6068515 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  CSC31_RS28565 (CSC31_5790) pilH 6068566..6068931 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  CSC31_RS28570 (CSC31_5791) pilG 6068978..6069385 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  CSC31_RS28575 (CSC31_5792) gshB 6069640..6070593 (+) 954 WP_003100943.1 glutathione synthase -
  CSC31_RS28580 (CSC31_5793) - 6070740..6071633 (+) 894 WP_003084580.1 TonB family protein -
  CSC31_RS28585 (CSC31_5794) - 6071682..6072251 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  CSC31_RS28590 (CSC31_5795) ruvX 6072251..6072685 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  CSC31_RS28595 (CSC31_5796) pyrR 6072797..6073309 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=251108 CSC31_RS28565 WP_003084587.1 6068566..6068931(-) (pilH) [Pseudomonas aeruginosa strain AR444]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=251108 CSC31_RS28565 WP_003084587.1 6068566..6068931(-) (pilH) [Pseudomonas aeruginosa strain AR444]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364