Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   CSC31_RS25695 Genome accession   NZ_CP029089
Coordinates   5454150..5455175 (-) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain AR444     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5449150..5460175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC31_RS25670 (CSC31_5209) aroE 5449352..5450176 (-) 825 WP_003111201.1 shikimate dehydrogenase -
  CSC31_RS25675 (CSC31_5210) hemF 5450234..5451151 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  CSC31_RS25680 (CSC31_5211) - 5451342..5452319 (+) 978 WP_003111202.1 NADPH:quinone reductase -
  CSC31_RS25685 (CSC31_5212) - 5452329..5452886 (-) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  CSC31_RS25690 (CSC31_5213) dprA 5452927..5454015 (-) 1089 WP_003114641.1 DNA-processing protein DprA Machinery gene
  CSC31_RS25695 (CSC31_5214) tsaP 5454150..5455175 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  CSC31_RS25700 (CSC31_5215) def 5455314..5455820 (+) 507 WP_003107059.1 peptide deformylase -
  CSC31_RS25705 (CSC31_5216) fmt 5455875..5456819 (+) 945 WP_003131369.1 methionyl-tRNA formyltransferase -
  CSC31_RS25710 (CSC31_5217) rsmB 5456816..5458120 (+) 1305 WP_003161949.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CSC31_RS25715 (CSC31_5218) trkA 5458148..5459521 (+) 1374 WP_003107053.1 Trk system potassium transporter TrkA -
  CSC31_RS25720 (CSC31_5219) - 5459670..5459987 (+) 318 WP_003120685.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=251091 CSC31_RS25695 WP_003097294.1 5454150..5455175(-) (tsaP) [Pseudomonas aeruginosa strain AR444]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=251091 CSC31_RS25695 WP_003097294.1 5454150..5455175(-) (tsaP) [Pseudomonas aeruginosa strain AR444]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAGATCCAGAATCCCCATCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTTAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCT
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAACTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393