Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CRN80_RS13180 Genome accession   NZ_CP023969
Coordinates   2778902..2780269 (+) Length   455 a.a.
NCBI ID   WP_003194313.1    Uniprot ID   A0AAJ3JSD5
Organism   Pseudomonas sp. FDAARGOS_380     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2773902..2785269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN80_RS13155 (CRN80_13155) - 2774048..2774758 (-) 711 WP_032895231.1 LuxR family transcriptional regulator -
  CRN80_RS13160 (CRN80_13160) - 2775205..2775981 (+) 777 WP_056792028.1 ferredoxin--NADP reductase -
  CRN80_RS13165 (CRN80_13165) mscL 2776024..2776440 (-) 417 WP_019818024.1 large-conductance mechanosensitive channel protein MscL -
  CRN80_RS13170 (CRN80_13170) katB 2776728..2778269 (+) 1542 WP_098950311.1 catalase KatB -
  CRN80_RS13175 (CRN80_13175) - 2778327..2778866 (+) 540 WP_032895235.1 ankyrin repeat domain-containing protein -
  CRN80_RS13180 (CRN80_13180) radA 2778902..2780269 (+) 1368 WP_003194313.1 DNA repair protein RadA Machinery gene
  CRN80_RS13185 (CRN80_13185) - 2780398..2780766 (-) 369 WP_094774581.1 PilZ domain-containing protein -
  CRN80_RS13190 (CRN80_13190) - 2780941..2783007 (+) 2067 WP_003194310.1 carbon starvation CstA family protein -
  CRN80_RS13195 (CRN80_13195) - 2783023..2783220 (+) 198 WP_003194308.1 YbdD/YjiX family protein -
  CRN80_RS13200 (CRN80_13200) yjiA 2783377..2784336 (+) 960 WP_098952608.1 GTPase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48757.26 Da        Isoelectric Point: 6.8987

>NTDB_id=251013 CRN80_RS13180 WP_003194313.1 2778902..2780269(+) (radA) [Pseudomonas sp. FDAARGOS_380]
MAKAKRMYGCTECGATFPKWAGQCSECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=251013 CRN80_RS13180 WP_003194313.1 2778902..2780269(+) (radA) [Pseudomonas sp. FDAARGOS_380]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACAGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCTCCGAATG
CGGCGCCTGGAACACCCTGACTGAAACCATGATCGAGAGTGGCGGTGCCGCAGCCCCCACCGGCCGGGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGCTTTTCCACCGCCTCCGGCGAACTG
GACCGGGTATTGGGCGGTGGCCTGGTGGACGGCTCGGTGGTGCTGATCGGCGGTGACCCTGGCATCGGCAAATCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCTGCGCTGTATGTCACCGGCGAAGAGTCCCAGCAGCAAGTGG
CCATGCGCGCCCGGCGCCTGGGCTTGCCTCAGGATCAGTTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAGGTCATGGTCATTGACTCGATCCAGACGATTTTCACTGAACAACTGCAATCGGCACC
CGGCGGCGTGTCACAGGTGCGCGAAAGCGCGGCGCTGCTGGTGCGTTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTCACCAAGGAAGGCGCACTGGCCGGGCCACGGGTGTTGGAACACATGGTCGACACCGTGTTGTATTTCGAA
GGGGAATCCGACGGTCGCCTGCGCCTGCTACGGGCGGTGAAGAACCGCTTTGGCGCCGTCAACGAACTGGGTGTGTTTGC
CATGACTGACCGGGGGCTGAAAGAAGTCTCGAACCCCTCCGCGATTTTTCTCACCCGCGCCCAGGAAGAAGTCCCAGGCA
GCGTGGTGATGGCCACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCC
AACCCACGGCGCGTCACCCTGGGCCTGGACCAGAACCGCCTGGCGATGTTGCTGGCGGTGCTGCACCGGCATGGCGGCAT
TCCGACCCACGACCAGGATGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGTAACCGTCCGTTGCCCCATGACTTGCTGGTGTTTGGCGAGGTGGGTTTGTCGGGC
GAAGTACGCCCGGTGCCGAGTGGGCAGGAGCGCTTGAAGGAGGCGGCCAAGCATGGCTTCAAACGGGCGATTGTGCCCAA
GGGCAATGCCCCGAAGGAGGCGCCGCCGGGGTTGCAGATCATTGCTGTGACGCGGCTGGAGCAGGCGTTGGATGCGCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466

Multiple sequence alignment