Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   CRN29_RS00580 Genome accession   NZ_CP023966
Coordinates   138065..138730 (+) Length   221 a.a.
NCBI ID   WP_047796788.1    Uniprot ID   -
Organism   Staphylococcus capitis strain FDAARGOS_378     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 133065..143730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN29_RS00560 (CRN29_00560) - 133155..133781 (-) 627 WP_098905364.1 FMN-dependent NADH-azoreductase -
  CRN29_RS00565 (CRN29_00565) - 134051..134152 (+) 102 WP_016898541.1 SE2200 family small protein -
  CRN29_RS00570 (CRN29_00570) - 134336..135877 (+) 1542 WP_047796790.1 NAD(P)H-binding protein -
  CRN29_RS00575 (CRN29_00575) - 136071..137555 (-) 1485 WP_002436173.1 alkaline phosphatase -
  CRN29_RS12135 - 137882..138034 (+) 153 WP_192940984.1 hypothetical protein -
  CRN29_RS00580 (CRN29_00580) braR 138065..138730 (+) 666 WP_047796788.1 response regulator transcription factor Regulator
  CRN29_RS00585 (CRN29_00585) braS 138736..139632 (+) 897 WP_047796787.1 sensor histidine kinase Regulator
  CRN29_RS00590 (CRN29_00590) - 139742..140491 (+) 750 WP_047796786.1 ABC transporter ATP-binding protein -
  CRN29_RS00595 (CRN29_00595) - 140685..142508 (+) 1824 WP_226859635.1 FtsX-like permease family protein -
  CRN29_RS00600 (CRN29_00600) - 142736..143608 (+) 873 WP_047796784.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25504.30 Da        Isoelectric Point: 4.2609

>NTDB_id=250946 CRN29_RS00580 WP_047796788.1 138065..138730(+) (braR) [Staphylococcus capitis strain FDAARGOS_378]
MKILIVEDDLVIAESLANELSKWNYEVNVVENFDQIMEDFRETEPQLVLLDINLPTLNGFHWCQEMRKESNVPIMFISSR
TDNMDQIMAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYDLSVSNDELDVNGCKLILDEAKLVKDDDAVQLSLTELQILK
MLFQNEGKYVSRTALIEKCWESENFIDDNTLAVNMTRLRKKLLSIGVDDFIETKKNVGYRV

Nucleotide


Download         Length: 666 bp        

>NTDB_id=250946 CRN29_RS00580 WP_047796788.1 138065..138730(+) (braR) [Staphylococcus capitis strain FDAARGOS_378]
ATGAAGATTCTCATAGTCGAAGATGATTTAGTTATTGCTGAGAGCTTGGCTAATGAACTTTCAAAATGGAATTATGAAGT
GAATGTTGTTGAAAACTTTGATCAAATTATGGAAGATTTTCGTGAAACAGAACCACAACTAGTATTATTAGATATCAACT
TACCTACACTCAATGGATTTCATTGGTGCCAAGAAATGCGCAAAGAATCTAATGTTCCTATCATGTTTATTAGTTCGAGA
ACTGATAATATGGATCAAATTATGGCTATTCAAATGGGTGGCGATGACTTTATTGAGAAACCGTTCAATTTATCGCTAAC
AGTAGCGAAGATACAAGCGTTACTTCGCCGTACATACGATTTATCCGTATCAAATGATGAATTAGATGTGAATGGTTGCA
AGTTGATTCTTGATGAGGCGAAACTCGTAAAGGATGATGACGCTGTTCAATTGTCATTAACAGAACTTCAAATTTTGAAA
ATGCTATTCCAAAATGAAGGAAAATACGTGAGTCGTACAGCATTAATTGAAAAGTGTTGGGAATCTGAAAACTTTATCGA
TGACAATACCTTAGCAGTTAATATGACTAGATTACGCAAGAAGTTATTATCCATAGGCGTTGATGATTTTATTGAAACGA
AGAAAAATGTCGGATATAGGGTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

82.805

100

0.828

Multiple sequence alignment