Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   SBO_RS12775 Genome accession   NC_007613
Coordinates   2258547..2259176 (-) Length   209 a.a.
NCBI ID   WP_000839131.1    Uniprot ID   -
Organism   Shigella boydii Sb227     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2253547..2264176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBO_RS12760 (SBO_2269) helD 2253789..2255843 (-) 2055 WP_004984893.1 DNA helicase IV -
  SBO_RS12765 (SBO_2270) - 2255966..2256412 (+) 447 WP_001261235.1 YccF domain-containing protein -
  SBO_RS12770 (SBO_2271) yccS 2256422..2258584 (+) 2163 WP_000875021.1 YccS family putative transporter -
  SBO_RS12775 (SBO_2272) sxy/tfoX 2258547..2259176 (-) 630 WP_000839131.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  SBO_RS12780 (SBO_2273) sulA 2259395..2259904 (+) 510 WP_000288712.1 SOS-induced cell division inhibitor SulA -
  SBO_RS12785 (SBO_2274) ompA 2260261..2261307 (+) 1047 WP_005047463.1 porin OmpA -
  SBO_RS12790 (SBO_2275) matP 2261383..2261837 (-) 455 Protein_2328 macrodomain Ter protein MatP -
  SBO_RS12795 (SBO_2276) - 2262022..2263782 (+) 1761 WP_000156488.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.10 Da        Isoelectric Point: 9.2180

>NTDB_id=25092 SBO_RS12775 WP_000839131.1 2258547..2259176(-) (sxy/tfoX) [Shigella boydii Sb227]
MKSLSYKRIYKSQEYLAMLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=25092 SBO_RS12775 WP_000839131.1 2258547..2259176(-) (sxy/tfoX) [Shigella boydii Sb227]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAATGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTTAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCACTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment