Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CRN16_RS23670 Genome accession   NZ_CP023899
Coordinates   4317600..4318229 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain FDAARGOS_433     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4312600..4323229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRN16_RS23655 (CRN16_23645) helD 4312842..4314896 (-) 2055 WP_000420536.1 DNA helicase IV -
  CRN16_RS23660 (CRN16_23650) yccF 4315019..4315465 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CRN16_RS23665 (CRN16_23655) yccS 4315475..4317637 (+) 2163 WP_000875023.1 YccS family putative transporter -
  CRN16_RS23670 (CRN16_23660) sxy/tfoX 4317600..4318229 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CRN16_RS23675 (CRN16_23665) sulA 4318448..4318957 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CRN16_RS23685 (CRN16_23675) ompA 4319314..4320366 (+) 1053 WP_001361736.1 porin OmpA -
  CRN16_RS23690 (CRN16_23680) matP 4320442..4320894 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CRN16_RS23695 (CRN16_23685) ycbZ 4321080..4322840 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=250775 CRN16_RS23670 WP_000839153.1 4317600..4318229(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_433]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=250775 CRN16_RS23670 WP_000839153.1 4317600..4318229(-) (sxy/tfoX) [Escherichia coli strain FDAARGOS_433]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment