Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   CRM98_RS08630 Genome accession   NZ_CP023867
Coordinates   1642975..1643412 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain FDAARGOS_422     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1637975..1648412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRM98_RS08615 (CRM98_08615) ispG 1638517..1639590 (-) 1074 WP_002852250.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  CRM98_RS08620 (CRM98_08620) cipA 1639736..1641130 (+) 1395 Protein_1657 DUF2972 domain-containing protein -
  CRM98_RS08625 (CRM98_08625) priA 1641140..1642993 (-) 1854 WP_002852169.1 primosomal protein N' -
  CRM98_RS08630 (CRM98_08630) Cj0683 1642975..1643412 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CRM98_RS08635 (CRM98_08635) - 1643409..1643651 (-) 243 WP_002852220.1 hypothetical protein -
  CRM98_RS08640 (CRM98_08640) - 1643641..1643871 (-) 231 WP_002852327.1 hypothetical protein -
  CRM98_RS08645 (CRM98_08645) uvrB 1644025..1645998 (+) 1974 WP_002852130.1 excinuclease ABC subunit UvrB -
  CRM98_RS09190 - 1646100..1646252 (-) 153 WP_224374383.1 hypothetical protein -
  CRM98_RS08650 (CRM98_08650) - 1646333..1647919 (-) 1587 WP_002852299.1 DUF4118 domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=250752 CRM98_RS08630 WP_002852324.1 1642975..1643412(-) (Cj0683) [Campylobacter jejuni strain FDAARGOS_422]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=250752 CRM98_RS08630 WP_002852324.1 1642975..1643412(-) (Cj0683) [Campylobacter jejuni strain FDAARGOS_422]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment